JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAP2K6_chr17_69409697_69558865	0/0	t0048	12400	1	0	0	1	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0049	12400	1	0	0	1	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0050	12400	1	0	0	1	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0051	12400	1	0	1	0	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0052	12399	1	0	0	0	0	1	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0053	12400	1	1	0	0	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0054	12401	1	0	0	1	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0055	12396	1	1	0	0	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0056	12400	1	1	0	0	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0057	12398	1	1	0	0	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0058	12396	1	1	0	0	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0059	12397	1	1	0	0	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0060	12396	1	0	1	0	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0061	12396	1	0	0	1	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0062	12395	1	1	0	0	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0063	12395	1	1	0	0	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0064	12396	1	1	0	0	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0065	12397	1	1	0	0	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0066	12396	1	1	0	0	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0067	12395	1	1	0	0	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K7_chr19_7898877_7919478	1/1	t0001	2116	146	37	21	69	4	13	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	t0002	2116	97	20	18	42	2	15	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	t0003	2112	63	15	12	29	2	5	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	t0004	2118	30	5	0	24	0	1	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	t0005	2116	27	2	17	0	5	3	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	t0006	2112	15	6	4	2	3	0	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	t0007	2124	11	3	0	8	0	0	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	t0008	2116	6	6	0	0	0	0	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	t0009	2110	4	0	0	4	0	0	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	t0010	2124	3	0	0	0	1	2	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	t0011	2116	2	0	1	0	0	1	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	t0012	2112	2	0	1	0	0	1	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	t0013	2116	1	0	0	0	0	1	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	t0014	2112	1	0	1	0	0	0	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	t0015	2124	1	0	0	0	0	1	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	t0016	2116	1	0	0	1	0	0	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	t0017	2116	1	0	0	1	0	0	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	t0018	2140	1	0	0	0	0	1	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	t0019	2134	1	0	0	0	0	1	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	t0020	2128	1	0	0	0	0	1	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	t0021	2126	1	0	1	0	0	0	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	t0022	2124	1	0	0	0	1	0	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	t0023	2124	1	0	0	1	0	0	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	t0024	2118	1	0	0	1	0	0	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	t0025	2116	1	0	0	1	0	0	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	t0026	2118	1	0	0	1	0	0	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	t0027	2116	1	0	0	1	0	0	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	t0028	2098	1	0	1	0	0	0	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	t0029	2116	1	0	1	0	0	0	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	t0030	2116	1	1	0	0	0	0	copy fasta	MAP2K7	chr19	7898877	7919478