JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAP3K10_chr19_40186426_40220575	1/1	t0001	890	351	90	59	160	16	24	copy fasta	MAP3K10	chr19	40186426	40220575
MAP3K10_chr19_40186426_40220575	0/0	t0002	891	34	5	8	10	2	9	copy fasta	MAP3K10	chr19	40186426	40220575
MAP3K10_chr19_40186426_40220575	0/0	t0003	890	7	0	3	0	0	4	copy fasta	MAP3K10	chr19	40186426	40220575
MAP3K10_chr19_40186426_40220575	0/0	t0004	890	3	3	0	0	0	0	copy fasta	MAP3K10	chr19	40186426	40220575
MAP3K10_chr19_40186426_40220575	0/0	t0005	855	1	0	0	1	0	0	copy fasta	MAP3K10	chr19	40186426	40220575
MAP3K10_chr19_40186426_40220575	0/0	t0006	890	1	0	0	1	0	0	copy fasta	MAP3K10	chr19	40186426	40220575
MAP3K10_chr19_40186426_40220575	0/0	t0007	891	1	0	0	0	0	1	copy fasta	MAP3K10	chr19	40186426	40220575
MAP3K11_chr11_65592757_65619221	1/0	t0001	1000	315	75	58	133	15	33	copy fasta	MAP3K11	chr11	65592757	65619221
MAP3K11_chr11_65592757_65619221	0/1	t0002	1000	64	12	11	32	3	5	copy fasta	MAP3K11	chr11	65592757	65619221
MAP3K11_chr11_65592757_65619221	0/0	t0003	1000	7	7	0	0	0	0	copy fasta	MAP3K11	chr11	65592757	65619221
MAP3K11_chr11_65592757_65619221	0/0	t0004	1000	1	1	0	0	0	0	copy fasta	MAP3K11	chr11	65592757	65619221
MAP3K11_chr11_65592757_65619221	0/0	t0005	1000	1	1	0	0	0	0	copy fasta	MAP3K11	chr11	65592757	65619221
MAP3K11_chr11_65592757_65619221	0/0	t0006	1000	1	1	0	0	0	0	copy fasta	MAP3K11	chr11	65592757	65619221
MAP3K11_chr11_65592757_65619221	0/0	t0007	1000	1	0	0	1	0	0	copy fasta	MAP3K11	chr11	65592757	65619221
MAP3K11_chr11_65592757_65619221	0/0	t0008	1000	1	0	1	0	0	0	copy fasta	MAP3K11	chr11	65592757	65619221
MAP3K11_chr11_65592757_65619221	0/0	t0009	1000	1	1	0	0	0	0	copy fasta	MAP3K11	chr11	65592757	65619221
MAP3K12_chr12_53474669_53504458	0/0	t0001	1600	230	54	41	100	12	23	copy fasta	MAP3K12	chr12	53474669	53504458
MAP3K12_chr12_53474669_53504458	0/0	t0002	1599	17	10	2	5	0	0	copy fasta	MAP3K12	chr12	53474669	53504458
MAP3K12_chr12_53474669_53504458	0/0	t0003	1601	16	1	3	8	0	4	copy fasta	MAP3K12	chr12	53474669	53504458
MAP3K12_chr12_53474669_53504458	0/1	t0004	1600	12	0	6	0	1	4	copy fasta	MAP3K12	chr12	53474669	53504458
MAP3K12_chr12_53474669_53504458	0/0	t0005	1600	6	0	5	0	1	0	copy fasta	MAP3K12	chr12	53474669	53504458
MAP3K12_chr12_53474669_53504458	0/0	t0006	1598	6	4	2	0	0	0	copy fasta	MAP3K12	chr12	53474669	53504458
MAP3K12_chr12_53474669_53504458	0/0	t0007	1601	5	0	1	3	0	1	copy fasta	MAP3K12	chr12	53474669	53504458
MAP3K12_chr12_53474669_53504458	0/0	t0008	1599	5	0	0	0	0	5	copy fasta	MAP3K12	chr12	53474669	53504458
MAP3K12_chr12_53474669_53504458	0/0	t0009	1598	4	4	0	0	0	0	copy fasta	MAP3K12	chr12	53474669	53504458
MAP3K12_chr12_53474669_53504458	0/0	t0010	1600	3	0	0	0	0	3	copy fasta	MAP3K12	chr12	53474669	53504458
MAP3K12_chr12_53474669_53504458	0/0	t0011	1600	3	1	2	0	0	0	copy fasta	MAP3K12	chr12	53474669	53504458
MAP3K12_chr12_53474669_53504458	0/0	t0012	1598	3	0	2	1	0	0	copy fasta	MAP3K12	chr12	53474669	53504458
MAP3K12_chr12_53474669_53504458	0/0	t0013	1602	2	0	0	0	0	2	copy fasta	MAP3K12	chr12	53474669	53504458
MAP3K12_chr12_53474669_53504458	0/0	t0014	1600	2	0	0	1	0	1	copy fasta	MAP3K12	chr12	53474669	53504458
MAP3K12_chr12_53474669_53504458	1/0	t0015	1583	2	0	1	0	0	0	copy fasta	MAP3K12	chr12	53474669	53504458
MAP3K12_chr12_53474669_53504458	0/0	t0016	1602	1	0	0	1	0	0	copy fasta	MAP3K12	chr12	53474669	53504458
MAP3K12_chr12_53474669_53504458	0/0	t0017	1600	1	1	0	0	0	0	copy fasta	MAP3K12	chr12	53474669	53504458
MAP3K12_chr12_53474669_53504458	0/0	t0018	1599	1	1	0	0	0	0	copy fasta	MAP3K12	chr12	53474669	53504458
MAP3K12_chr12_53474669_53504458	0/0	t0019	1600	1	1	0	0	0	0	copy fasta	MAP3K12	chr12	53474669	53504458
MAP3K12_chr12_53474669_53504458	0/0	t0020	1602	1	0	0	1	0	0	copy fasta	MAP3K12	chr12	53474669	53504458
MAP3K12_chr12_53474669_53504458	0/0	t0021	1600	1	0	0	1	0	0	copy fasta	MAP3K12	chr12	53474669	53504458
MAP3K12_chr12_53474669_53504458	0/0	t0022	1600	1	0	0	1	0	0	copy fasta	MAP3K12	chr12	53474669	53504458
MAP3K12_chr12_53474669_53504458	0/0	t0023	1601	1	0	1	0	0	0	copy fasta	MAP3K12	chr12	53474669	53504458
MAP3K12_chr12_53474669_53504458	0/0	t0024	1599	1	0	1	0	0	0	copy fasta	MAP3K12	chr12	53474669	53504458
MAP3K12_chr12_53474669_53504458	0/0	t0025	1600	1	1	0	0	0	0	copy fasta	MAP3K12	chr12	53474669	53504458
MAP3K12_chr12_53474669_53504458	0/0	t0026	1600	1	0	1	0	0	0	copy fasta	MAP3K12	chr12	53474669	53504458
MAP3K12_chr12_53474669_53504458	0/0	t0027	1600	1	0	0	0	0	1	copy fasta	MAP3K12	chr12	53474669	53504458
MAP3K13_chr3_185358136_185494094	0/0	t0001	6988	58	9	3	38	1	7	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0002	6987	53	7	11	27	1	7	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/1	t0003	6989	45	19	4	17	0	4	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0004	6990	22	5	5	7	2	3	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0005	6988	9	1	3	3	0	2	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0006	6987	6	0	0	6	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0007	6988	6	2	4	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094