JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAP3K13_chr3_185358136_185494094	0/0	t0008	6988	5	4	1	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0009	6989	5	5	0	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	1/0	t0010	6957	5	3	1	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0011	6989	4	4	0	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0012	6988	3	0	3	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0013	6988	3	0	3	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0014	6989	3	1	0	2	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0015	6988	2	0	0	2	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0016	6987	2	2	0	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0017	6988	2	0	0	0	0	2	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0018	6989	2	0	1	1	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0019	6990	2	0	0	0	0	2	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0020	6989	1	0	0	1	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0021	6989	1	0	0	1	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0022	6989	1	0	0	1	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0023	6988	1	1	0	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0024	6988	1	1	0	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0025	6987	1	1	0	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0026	6988	1	0	0	0	0	1	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0027	6988	1	0	0	1	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0028	6989	1	0	0	1	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0029	6988	1	0	0	0	0	1	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0030	6990	1	0	1	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0031	6989	1	0	0	1	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0032	6988	1	1	0	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0033	6985	1	1	0	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0034	6986	1	0	1	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0035	6987	1	0	1	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0036	6989	1	1	0	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0037	6987	1	1	0	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0038	6987	1	0	0	1	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0039	6987	1	0	0	0	1	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0040	6987	1	0	0	1	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0041	6989	1	1	0	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0042	6987	1	0	0	1	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0043	6988	1	1	0	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0044	6989	1	0	0	1	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0045	6987	1	1	0	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0046	6987	1	1	0	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0047	6957	1	1	0	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0048	6989	1	1	0	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0049	6987	1	0	0	1	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0050	6989	1	0	1	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0051	6989	1	0	0	1	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0052	6989	1	0	0	1	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0053	6989	1	0	0	0	1	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0054	6990	1	0	0	1	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0055	6990	1	0	0	0	0	1	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0056	6991	1	1	0	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0057	6991	1	0	0	1	0	0	copy fasta	MAP3K13	chr3	185358136	185494094