JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAP3K13_chr3_185358136_185494094	0/0	t0058	6990	1	0	1	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0059	6990	1	1	0	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	t0060	6987	1	1	0	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K14_chr17_45258119_45322020	1/1	t0001	1599	152	42	30	64	6	8	copy fasta	MAP3K14	chr17	45258119	45322020
MAP3K14_chr17_45258119_45322020	0/0	t0002	1599	119	22	23	53	5	16	copy fasta	MAP3K14	chr17	45258119	45322020
MAP3K14_chr17_45258119_45322020	0/0	t0003	1599	20	0	2	17	0	1	copy fasta	MAP3K14	chr17	45258119	45322020
MAP3K14_chr17_45258119_45322020	0/0	t0004	1599	16	13	1	0	0	2	copy fasta	MAP3K14	chr17	45258119	45322020
MAP3K14_chr17_45258119_45322020	0/0	t0005	1599	7	1	4	0	2	0	copy fasta	MAP3K14	chr17	45258119	45322020
MAP3K14_chr17_45258119_45322020	0/0	t0006	1599	3	0	0	3	0	0	copy fasta	MAP3K14	chr17	45258119	45322020
MAP3K14_chr17_45258119_45322020	0/0	t0007	1599	3	3	0	0	0	0	copy fasta	MAP3K14	chr17	45258119	45322020
MAP3K14_chr17_45258119_45322020	0/0	t0008	1599	2	2	0	0	0	0	copy fasta	MAP3K14	chr17	45258119	45322020
MAP3K14_chr17_45258119_45322020	0/0	t0009	1599	2	2	0	0	0	0	copy fasta	MAP3K14	chr17	45258119	45322020
MAP3K14_chr17_45258119_45322020	0/0	t0010	1599	2	2	0	0	0	0	copy fasta	MAP3K14	chr17	45258119	45322020
MAP3K14_chr17_45258119_45322020	0/0	t0011	1599	2	0	0	2	0	0	copy fasta	MAP3K14	chr17	45258119	45322020
MAP3K14_chr17_45258119_45322020	0/0	t0012	1599	1	0	0	0	1	0	copy fasta	MAP3K14	chr17	45258119	45322020
MAP3K14_chr17_45258119_45322020	0/0	t0013	1599	1	0	0	1	0	0	copy fasta	MAP3K14	chr17	45258119	45322020
MAP3K14_chr17_45258119_45322020	0/0	t0014	1599	1	0	0	1	0	0	copy fasta	MAP3K14	chr17	45258119	45322020
MAP3K14_chr17_45258119_45322020	0/0	t0015	1599	1	1	0	0	0	0	copy fasta	MAP3K14	chr17	45258119	45322020
MAP3K14_chr17_45258119_45322020	0/0	t0016	1599	1	1	0	0	0	0	copy fasta	MAP3K14	chr17	45258119	45322020
MAP3K14_chr17_45258119_45322020	0/0	t0017	1599	1	0	0	0	0	1	copy fasta	MAP3K14	chr17	45258119	45322020
MAP3K14_chr17_45258119_45322020	0/0	t0018	1599	1	0	0	1	0	0	copy fasta	MAP3K14	chr17	45258119	45322020
MAP3K14_chr17_45258119_45322020	0/0	t0019	1599	1	1	0	0	0	0	copy fasta	MAP3K14	chr17	45258119	45322020
MAP3K15_chrX_19355059_19520508	1/1	t0001	938	85	4	19	45	4	11	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	t0002	938	20	12	2	2	0	4	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	t0003	938	15	13	2	0	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	t0004	938	8	2	1	3	1	1	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	t0005	938	5	5	0	0	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	t0006	938	5	3	0	1	0	1	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	t0007	925	4	4	0	0	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	t0008	925	3	2	1	0	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	t0009	925	3	1	2	0	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	t0010	938	2	2	0	0	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	t0011	938	2	2	0	0	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	t0012	938	1	0	0	1	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	t0013	938	1	1	0	0	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	t0014	938	1	1	0	0	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	t0015	938	1	1	0	0	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	t0016	938	1	0	0	1	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	t0017	938	1	1	0	0	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	t0018	938	1	1	0	0	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	t0019	938	1	1	0	0	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	t0020	938	1	1	0	0	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	t0021	938	1	1	0	0	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	t0022	925	1	1	0	0	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K19_chr2_134959491_135052447	0/1	t0001	1046	189	33	35	85	3	32	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	1/0	t0002	1046	81	27	18	24	3	8	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	t0003	1046	43	4	3	36	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	t0004	1046	7	7	0	0	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	t0005	1046	4	4	0	0	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	t0006	1046	3	3	0	0	0	0	copy fasta	MAP3K19	chr2	134959491	135052447