JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAP3K19_chr2_134959491_135052447	0/0	t0007	1046	1	0	0	1	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	t0008	1046	1	0	1	0	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	t0009	1046	1	0	0	1	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	t0010	1046	1	0	0	1	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	t0011	1046	1	0	0	1	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	t0012	1046	1	0	0	1	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	t0013	1046	1	0	1	0	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K1_chr5_56810549_56901152	0/0	t0001	2498	74	18	15	34	2	5	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/1	t0002	2497	72	11	26	13	6	15	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	t0003	2496	53	0	6	35	2	10	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	t0004	2500	38	4	5	24	2	3	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	t0005	2499	30	1	4	18	0	7	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	1/0	t0006	2498	20	0	0	19	0	0	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	t0007	2497	16	9	1	6	0	0	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	t0008	2498	12	6	0	6	0	0	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	t0009	2500	9	9	0	0	0	0	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	t0010	2499	9	9	0	0	0	0	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	t0011	2497	8	0	0	7	0	1	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	t0012	2498	5	0	2	3	0	0	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	t0013	2497	5	3	1	0	0	1	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	t0014	2502	5	5	0	0	0	0	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	t0015	2499	4	1	2	0	0	1	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	t0016	2496	4	2	1	1	0	0	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	t0017	2498	3	3	0	0	0	0	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	t0018	2498	3	0	0	2	0	1	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	t0019	2501	2	1	1	0	0	0	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	t0020	2499	2	0	2	0	0	0	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	t0021	2500	1	0	0	1	0	0	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	t0022	2496	1	0	0	0	0	1	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	t0023	2496	1	0	1	0	0	0	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	t0024	2500	1	1	0	0	0	0	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	t0025	2501	1	0	1	0	0	0	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	t0026	2497	1	0	0	1	0	0	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	t0027	2497	1	1	0	0	0	0	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	t0028	2497	1	0	0	0	0	1	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	t0029	2498	1	0	0	1	0	0	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	t0030	2498	1	0	0	1	0	0	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K20_chr2_173070846_173273015	0/0	t0001	1457	79	0	8	66	0	5	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/1	t0002	1458	58	32	9	6	2	8	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	t0003	1460	56	1	17	22	3	13	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	t0004	1457	42	5	10	22	0	5	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	t0005	1457	34	7	11	8	1	7	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	t0006	1458	16	13	2	0	1	0	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	t0007	1459	15	0	6	5	0	4	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	t0008	1457	6	6	0	0	0	0	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	t0009	1459	5	1	3	1	0	0	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	t0010	1457	5	5	0	0	0	0	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	t0011	1458	5	5	0	0	0	0	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	1/0	t0012	1457	2	1	0	0	0	0	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	t0013	1458	2	0	2	0	0	0	copy fasta	MAP3K20	chr2	173070846	173273015