JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAP3K20_chr2_173070846_173273015	0/0	t0014	1458	1	1	0	0	0	0	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	t0015	1457	1	1	0	0	0	0	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	t0016	1458	1	1	0	0	0	0	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	t0017	1457	1	1	0	0	0	0	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	t0018	1459	1	0	0	1	0	0	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	t0019	1458	1	0	0	0	1	0	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	t0020	1458	1	1	0	0	0	0	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	t0021	1457	1	0	0	1	0	0	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	t0022	1457	1	1	0	0	0	0	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K21_chr1_233322724_233390148	1/1	t0001	2743	99	20	14	44	7	12	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0002	2745	86	16	11	46	1	12	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0003	2745	21	0	9	9	0	3	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0004	3093	17	0	1	14	2	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0005	2744	16	14	2	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0006	3094	10	0	1	7	0	2	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0007	2745	8	6	2	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0008	3075	7	0	0	7	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0009	2746	6	6	0	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0010	3067	6	1	3	2	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0011	3065	6	1	0	5	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0012	2745	5	5	0	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0013	3073	5	0	0	4	0	1	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0014	3096	4	1	1	1	0	1	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0015	3071	4	2	0	2	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0016	2745	4	4	0	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0017	2745	3	2	1	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0018	2745	3	3	0	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0019	2745	3	0	0	0	2	1	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0020	3092	3	0	0	3	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0021	3080	3	1	1	1	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0022	3076	3	0	0	3	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0023	3069	3	1	0	2	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0024	3062	3	0	1	1	0	1	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0025	2745	2	0	2	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0026	3087	2	2	0	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0027	3077	2	1	0	0	1	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0028	3074	2	0	0	1	0	1	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0029	3072	2	0	0	2	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0030	3068	2	0	0	2	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0031	3066	2	0	0	2	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0032	3059	2	0	2	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0033	2745	2	2	0	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0034	2745	1	0	0	0	0	1	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0035	3097	1	1	0	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0036	2745	1	0	1	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0037	2745	1	0	0	1	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0038	2745	1	0	0	0	0	1	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0039	2745	1	0	0	1	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0040	3079	1	1	0	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0041	3097	1	0	1	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148