JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAP3K21_chr1_233322724_233390148	0/0	t0042	3090	1	0	0	1	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0043	3088	1	1	0	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0044	3086	1	1	0	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0045	3084	1	0	0	0	1	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0046	3082	1	0	0	1	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0047	3081	1	0	0	1	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0048	3075	1	0	0	1	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0049	3070	1	0	0	0	0	1	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0050	3070	1	0	1	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0051	3066	1	0	0	1	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0052	3064	1	0	0	0	0	1	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0053	3058	1	0	0	1	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0054	3054	1	0	0	0	0	1	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0055	2743	1	0	0	1	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0056	2743	1	0	1	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0057	2743	1	0	0	0	0	1	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0058	2743	1	0	0	1	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	t0059	2743	1	0	1	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K2_chr2_127293668_127392975	0/0	t0001	9496	81	16	10	46	0	9	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0002	9494	37	2	3	25	0	7	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0003	9494	18	3	1	10	0	4	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0004	9503	16	4	8	0	0	4	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0005	9496	13	0	0	13	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0006	9494	11	0	2	7	1	1	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0007	9501	9	0	5	0	2	2	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0008	9501	9	3	6	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0009	9501	7	0	0	6	0	1	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0010	9496	7	0	2	5	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0011	9496	6	0	2	3	0	1	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0012	9504	6	5	1	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0013	9503	5	4	1	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0014	9498	4	4	0	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0015	9497	4	1	1	1	0	1	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0016	9499	3	3	0	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0017	9494	3	3	0	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0018	9501	3	3	0	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0019	9494	3	0	2	0	0	1	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0020	9494	3	3	0	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0021	9495	3	0	0	1	0	2	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0022	9494	3	3	0	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0023	9498	3	2	1	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/1	t0024	9496	3	0	2	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0025	9487	3	3	0	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0026	9494	2	0	0	0	1	1	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0027	9499	2	2	0	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0028	9505	2	2	0	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0029	9498	2	2	0	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0030	9496	2	0	0	2	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0031	9497	2	1	0	1	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0032	9496	2	0	0	0	2	0	copy fasta	MAP3K2	chr2	127293668	127392975