JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAP3K2_chr2_127293668_127392975	0/0	t0033	9491	1	1	0	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0034	9494	1	0	0	1	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0035	9498	1	0	0	1	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0036	9496	1	0	0	1	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0037	9496	1	0	0	1	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0038	9495	1	0	0	1	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0039	9495	1	0	0	1	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0040	9494	1	0	1	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0041	9494	1	0	0	0	0	1	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0042	9494	1	0	1	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0043	9494	1	0	0	0	0	1	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0044	9494	1	0	0	1	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0045	9490	1	0	0	1	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0046	9501	1	0	0	0	0	1	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0047	9505	1	1	0	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0048	9498	1	1	0	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0049	9503	1	1	0	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0050	9501	1	0	0	0	0	1	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0051	9503	1	1	0	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0052	9504	1	0	0	0	0	1	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0053	9502	1	1	0	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0054	9496	1	1	0	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0055	9501	1	0	1	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0056	9494	1	0	0	1	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0057	9497	1	1	0	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0058	9491	1	1	0	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0059	9493	1	1	0	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0060	9494	1	1	0	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0061	9496	1	1	0	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0062	9494	1	0	0	0	0	1	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0063	9494	1	1	0	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0064	9491	1	0	1	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0065	9491	1	0	1	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0066	9496	1	1	0	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0067	9495	1	0	0	1	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	1/0	t0068	9501	1	0	0	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0069	9498	1	1	0	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0070	9499	1	1	0	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0071	9496	1	0	0	1	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0072	9496	1	0	0	0	0	1	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0073	9495	1	0	0	1	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0074	9497	1	0	0	0	0	1	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	t0075	9487	1	1	0	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K3_chr17_63617417_63701305	1/0	t0001	2872	74	16	22	22	3	10	copy fasta	MAP3K3	chr17	63617417	63701305
MAP3K3_chr17_63617417_63701305	0/1	t0002	2869	40	13	10	8	4	4	copy fasta	MAP3K3	chr17	63617417	63701305
MAP3K3_chr17_63617417_63701305	0/0	t0003	2872	22	20	2	0	0	0	copy fasta	MAP3K3	chr17	63617417	63701305
MAP3K3_chr17_63617417_63701305	0/0	t0004	2872	9	8	1	0	0	0	copy fasta	MAP3K3	chr17	63617417	63701305
MAP3K3_chr17_63617417_63701305	0/0	t0005	2871	7	7	0	0	0	0	copy fasta	MAP3K3	chr17	63617417	63701305
MAP3K3_chr17_63617417_63701305	0/0	t0006	2869	5	4	1	0	0	0	copy fasta	MAP3K3	chr17	63617417	63701305
MAP3K3_chr17_63617417_63701305	0/0	t0007	2869	5	1	3	0	1	0	copy fasta	MAP3K3	chr17	63617417	63701305