JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAP3K3_chr17_63617417_63701305	0/0	t0008	2872	2	2	0	0	0	0	copy fasta	MAP3K3	chr17	63617417	63701305
MAP3K3_chr17_63617417_63701305	0/0	t0009	2872	2	2	0	0	0	0	copy fasta	MAP3K3	chr17	63617417	63701305
MAP3K3_chr17_63617417_63701305	0/0	t0010	2870	1	1	0	0	0	0	copy fasta	MAP3K3	chr17	63617417	63701305
MAP3K3_chr17_63617417_63701305	0/0	t0011	2870	1	1	0	0	0	0	copy fasta	MAP3K3	chr17	63617417	63701305
MAP3K3_chr17_63617417_63701305	0/0	t0012	2872	1	1	0	0	0	0	copy fasta	MAP3K3	chr17	63617417	63701305
MAP3K3_chr17_63617417_63701305	0/0	t0013	2872	1	0	0	1	0	0	copy fasta	MAP3K3	chr17	63617417	63701305
MAP3K3_chr17_63617417_63701305	0/0	t0014	2869	1	0	1	0	0	0	copy fasta	MAP3K3	chr17	63617417	63701305
MAP3K3_chr17_63617417_63701305	0/0	t0015	2869	1	1	0	0	0	0	copy fasta	MAP3K3	chr17	63617417	63701305
MAP3K3_chr17_63617417_63701305	0/0	t0016	2872	1	1	0	0	0	0	copy fasta	MAP3K3	chr17	63617417	63701305
MAP3K3_chr17_63617417_63701305	0/0	t0017	2870	1	1	0	0	0	0	copy fasta	MAP3K3	chr17	63617417	63701305
MAP3K3_chr17_63617417_63701305	0/0	t0018	2870	1	1	0	0	0	0	copy fasta	MAP3K3	chr17	63617417	63701305
MAP3K3_chr17_63617417_63701305	0/0	t0019	2872	1	1	0	0	0	0	copy fasta	MAP3K3	chr17	63617417	63701305
MAP3K3_chr17_63617417_63701305	0/0	t0020	2870	1	1	0	0	0	0	copy fasta	MAP3K3	chr17	63617417	63701305
MAP3K3_chr17_63617417_63701305	0/0	t0021	2872	1	1	0	0	0	0	copy fasta	MAP3K3	chr17	63617417	63701305
MAP3K3_chr17_63617417_63701305	0/0	t0022	2872	1	1	0	0	0	0	copy fasta	MAP3K3	chr17	63617417	63701305
MAP3K3_chr17_63617417_63701305	0/0	t0023	2872	1	0	0	1	0	0	copy fasta	MAP3K3	chr17	63617417	63701305
MAP3K4_chr6_160986769_161122380	0/1	t0001	674	207	46	29	100	8	23	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K4_chr6_160986769_161122380	1/0	t0002	674	125	36	35	41	4	8	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K4_chr6_160986769_161122380	0/0	t0003	674	4	4	0	0	0	0	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K4_chr6_160986769_161122380	0/0	t0004	674	2	2	0	0	0	0	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K4_chr6_160986769_161122380	0/0	t0005	674	1	0	0	1	0	0	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K4_chr6_160986769_161122380	0/0	t0006	674	1	0	0	1	0	0	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K4_chr6_160986769_161122380	0/0	t0007	674	1	0	0	0	0	1	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K4_chr6_160986769_161122380	0/0	t0008	674	1	0	0	1	0	0	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K5_chr6_136552046_136797477	1/1	t0001	1033	119	47	19	39	2	10	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	t0002	1032	18	1	8	9	0	0	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	t0003	1034	10	10	0	0	0	0	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	t0004	1033	6	1	2	3	0	0	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	t0005	1033	3	3	0	0	0	0	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	t0006	1034	2	2	0	0	0	0	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	t0007	1033	1	1	0	0	0	0	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	t0008	1034	1	0	0	1	0	0	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	t0009	1033	1	1	0	0	0	0	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	t0010	1033	1	0	1	0	0	0	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K6_chr1_27350184_27371961	1/1	t0001	572	359	73	71	155	17	41	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	t0002	572	20	0	6	13	0	1	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	t0003	572	19	15	4	0	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	t0004	572	6	5	1	0	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	t0005	572	3	0	0	3	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	t0006	572	2	0	0	0	0	2	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	t0007	572	1	0	0	1	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	t0008	572	1	0	0	0	1	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	t0009	572	1	1	0	0	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K7CL_chr21_29125644_29180887	0/0	t0001	1315	128	50	15	45	1	17	copy fasta	MAP3K7CL	chr21	29125644	29180887
MAP3K7CL_chr21_29125644_29180887	0/1	t0002	1315	107	17	19	54	6	10	copy fasta	MAP3K7CL	chr21	29125644	29180887
MAP3K7CL_chr21_29125644_29180887	0/0	t0003	1315	77	2	19	42	3	11	copy fasta	MAP3K7CL	chr21	29125644	29180887
MAP3K7CL_chr21_29125644_29180887	1/0	t0004	1315	67	3	16	43	0	4	copy fasta	MAP3K7CL	chr21	29125644	29180887
MAP3K7CL_chr21_29125644_29180887	0/0	t0005	1315	9	8	1	0	0	0	copy fasta	MAP3K7CL	chr21	29125644	29180887
MAP3K7CL_chr21_29125644_29180887	0/0	t0006	1315	8	8	0	0	0	0	copy fasta	MAP3K7CL	chr21	29125644	29180887
MAP3K7CL_chr21_29125644_29180887	0/0	t0007	1315	2	2	0	0	0	0	copy fasta	MAP3K7CL	chr21	29125644	29180887