JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAP3K7CL_chr21_29125644_29180887	0/0	t0008	1315	1	0	0	1	0	0	copy fasta	MAP3K7CL	chr21	29125644	29180887
MAP3K7CL_chr21_29125644_29180887	0/0	t0009	1315	1	0	0	1	0	0	copy fasta	MAP3K7CL	chr21	29125644	29180887
MAP3K7CL_chr21_29125644_29180887	0/0	t0010	1315	1	0	1	0	0	0	copy fasta	MAP3K7CL	chr21	29125644	29180887
MAP3K7CL_chr21_29125644_29180887	0/0	t0011	1315	1	1	0	0	0	0	copy fasta	MAP3K7CL	chr21	29125644	29180887
MAP3K7CL_chr21_29125644_29180887	0/0	t0012	1315	1	0	1	0	0	0	copy fasta	MAP3K7CL	chr21	29125644	29180887
MAP3K7CL_chr21_29125644_29180887	0/0	t0013	1315	1	0	0	1	0	0	copy fasta	MAP3K7CL	chr21	29125644	29180887
MAP3K7CL_chr21_29125644_29180887	0/0	t0014	1315	1	1	0	0	0	0	copy fasta	MAP3K7CL	chr21	29125644	29180887
MAP3K7CL_chr21_29125644_29180887	0/0	t0015	1315	1	0	0	1	0	0	copy fasta	MAP3K7CL	chr21	29125644	29180887
MAP3K7_chr6_90508579_90592072	1/0	t0001	3112	115	12	27	62	0	13	copy fasta	MAP3K7	chr6	90508579	90592072
MAP3K7_chr6_90508579_90592072	0/1	t0002	3104	71	4	12	38	4	12	copy fasta	MAP3K7	chr6	90508579	90592072
MAP3K7_chr6_90508579_90592072	0/0	t0003	3104	42	7	10	16	4	5	copy fasta	MAP3K7	chr6	90508579	90592072
MAP3K7_chr6_90508579_90592072	0/0	t0004	3104	33	29	4	0	0	0	copy fasta	MAP3K7	chr6	90508579	90592072
MAP3K7_chr6_90508579_90592072	0/0	t0005	3104	18	4	6	3	2	3	copy fasta	MAP3K7	chr6	90508579	90592072
MAP3K7_chr6_90508579_90592072	0/0	t0006	3103	18	1	2	10	1	4	copy fasta	MAP3K7	chr6	90508579	90592072
MAP3K7_chr6_90508579_90592072	0/0	t0007	3105	10	10	0	0	0	0	copy fasta	MAP3K7	chr6	90508579	90592072
MAP3K7_chr6_90508579_90592072	0/0	t0008	3104	10	0	2	8	0	0	copy fasta	MAP3K7	chr6	90508579	90592072
MAP3K7_chr6_90508579_90592072	0/0	t0009	3104	5	2	1	0	0	2	copy fasta	MAP3K7	chr6	90508579	90592072
MAP3K7_chr6_90508579_90592072	0/0	t0010	3112	4	4	0	0	0	0	copy fasta	MAP3K7	chr6	90508579	90592072
MAP3K7_chr6_90508579_90592072	0/0	t0011	3112	3	3	0	0	0	0	copy fasta	MAP3K7	chr6	90508579	90592072
MAP3K7_chr6_90508579_90592072	0/0	t0012	3104	2	0	0	2	0	0	copy fasta	MAP3K7	chr6	90508579	90592072
MAP3K7_chr6_90508579_90592072	0/0	t0013	3104	2	2	0	0	0	0	copy fasta	MAP3K7	chr6	90508579	90592072
MAP3K7_chr6_90508579_90592072	0/0	t0014	3104	2	2	0	0	0	0	copy fasta	MAP3K7	chr6	90508579	90592072
MAP3K7_chr6_90508579_90592072	0/0	t0015	3104	1	0	1	0	0	0	copy fasta	MAP3K7	chr6	90508579	90592072
MAP3K7_chr6_90508579_90592072	0/0	t0016	3104	1	0	0	0	0	1	copy fasta	MAP3K7	chr6	90508579	90592072
MAP3K7_chr6_90508579_90592072	0/0	t0017	3104	1	0	0	0	1	0	copy fasta	MAP3K7	chr6	90508579	90592072
MAP3K7_chr6_90508579_90592072	0/0	t0018	3104	1	1	0	0	0	0	copy fasta	MAP3K7	chr6	90508579	90592072
MAP3K7_chr6_90508579_90592072	0/0	t0019	3112	1	0	0	1	0	0	copy fasta	MAP3K7	chr6	90508579	90592072
MAP3K7_chr6_90508579_90592072	0/0	t0020	3104	1	0	1	0	0	0	copy fasta	MAP3K7	chr6	90508579	90592072
MAP3K7_chr6_90508579_90592072	0/0	t0021	3112	1	1	0	0	0	0	copy fasta	MAP3K7	chr6	90508579	90592072
MAP3K7_chr6_90508579_90592072	0/0	t0022	3112	1	1	0	0	0	0	copy fasta	MAP3K7	chr6	90508579	90592072
MAP3K7_chr6_90508579_90592072	0/0	t0023	3104	1	1	0	0	0	0	copy fasta	MAP3K7	chr6	90508579	90592072
MAP3K8_chr10_30429184_30466833	0/1	t0001	1447	276	37	61	139	11	27	copy fasta	MAP3K8	chr10	30429184	30466833
MAP3K8_chr10_30429184_30466833	1/0	t0002	1447	42	8	9	14	1	9	copy fasta	MAP3K8	chr10	30429184	30466833
MAP3K8_chr10_30429184_30466833	0/0	t0003	1445	19	19	0	0	0	0	copy fasta	MAP3K8	chr10	30429184	30466833
MAP3K8_chr10_30429184_30466833	0/0	t0004	1447	19	19	0	0	0	0	copy fasta	MAP3K8	chr10	30429184	30466833
MAP3K8_chr10_30429184_30466833	0/0	t0005	1447	8	0	0	8	0	0	copy fasta	MAP3K8	chr10	30429184	30466833
MAP3K8_chr10_30429184_30466833	0/0	t0006	1447	7	0	0	7	0	0	copy fasta	MAP3K8	chr10	30429184	30466833
MAP3K8_chr10_30429184_30466833	0/0	t0007	1447	3	3	0	0	0	0	copy fasta	MAP3K8	chr10	30429184	30466833
MAP3K8_chr10_30429184_30466833	0/0	t0008	1447	2	2	0	0	0	0	copy fasta	MAP3K8	chr10	30429184	30466833
MAP3K8_chr10_30429184_30466833	0/0	t0009	1447	2	2	0	0	0	0	copy fasta	MAP3K8	chr10	30429184	30466833
MAP3K8_chr10_30429184_30466833	0/0	t0010	1447	1	0	0	1	0	0	copy fasta	MAP3K8	chr10	30429184	30466833
MAP3K8_chr10_30429184_30466833	0/0	t0011	1447	1	1	0	0	0	0	copy fasta	MAP3K8	chr10	30429184	30466833
MAP3K8_chr10_30429184_30466833	0/0	t0012	1447	1	1	0	0	0	0	copy fasta	MAP3K8	chr10	30429184	30466833
MAP3K8_chr10_30429184_30466833	0/0	t0013	1447	1	1	0	0	0	0	copy fasta	MAP3K8	chr10	30429184	30466833
MAP3K8_chr10_30429184_30466833	0/0	t0014	1447	1	0	1	0	0	0	copy fasta	MAP3K8	chr10	30429184	30466833
MAP3K8_chr10_30429184_30466833	0/0	t0015	1447	1	0	1	0	0	0	copy fasta	MAP3K8	chr10	30429184	30466833
MAP3K8_chr10_30429184_30466833	0/0	t0016	1447	1	1	0	0	0	0	copy fasta	MAP3K8	chr10	30429184	30466833
MAP3K8_chr10_30429184_30466833	0/0	t0017	1447	1	0	0	1	0	0	copy fasta	MAP3K8	chr10	30429184	30466833
MAP3K9_chr14_70717526_70814513	0/0	t0001	8185	40	3	16	15	3	3	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0002	8196	30	4	0	25	1	0	copy fasta	MAP3K9	chr14	70717526	70814513