JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
MAP3K9_chr14_70717526_70814513	0/0	t0053	8203	1	0	0	1	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0054	8200	1	1	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0055	8202	1	1	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0056	8187	1	1	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0057	8202	1	1	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0058	8202	1	1	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0059	8186	1	1	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0060	8185	1	1	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0061	8185	1	0	0	1	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0062	8186	1	0	0	1	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0063	8187	1	0	0	0	1	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0064	8197	1	0	1	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0065	8197	1	0	0	0	1	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0066	8197	1	0	0	1	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0067	8183	1	1	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0068	8185	1	0	0	1	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0069	8202	1	1	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0070	8186	1	0	0	1	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0071	8198	1	1	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0072	8202	1	1	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0073	8204	1	1	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0074	8200	1	1	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0075	8200	1	1	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0076	8200	1	0	1	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0077	8199	1	1	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0078	8198	1	1	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0079	8204	1	0	1	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0080	8203	1	0	1	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0081	8202	1	0	0	0	1	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0082	8198	1	1	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0083	8198	1	0	0	1	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0084	8203	1	0	0	1	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0085	8197	1	0	0	1	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0086	8198	1	0	0	1	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0087	8204	1	1	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0088	8203	1	0	0	1	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0089	8206	1	0	0	1	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0090	8205	1	0	1	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0091	8205	1	0	0	0	1	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0092	8203	1	0	0	1	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0093	8202	1	0	1	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0094	8198	1	1	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0095	8199	1	0	0	0	1	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0096	8198	1	0	1	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0097	8198	1	0	0	1	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0098	8197	1	1	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0099	8202	1	0	1	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0100	8197	1	0	0	0	1	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0101	8204	1	0	1	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0102	8203	1	0	0	1	0	copy fasta	MAP3K9	chr14	70717526	70814513