JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAP3K9_chr14_70717526_70814513	0/0	t0103	8203	1	1	0	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0104	8204	1	0	0	0	1	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0105	8202	1	1	0	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0106	8204	1	0	1	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0107	8203	1	0	1	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0108	8197	1	0	1	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0109	8197	1	1	0	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0110	8197	1	0	0	0	0	1	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0111	8182	1	1	0	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0112	8182	1	0	1	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0113	8183	1	1	0	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0114	8197	1	1	0	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	t0115	8200	1	1	0	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP4K1_chr19_38582641_38622953	1/1	t0001	166	346	82	68	146	8	40	copy fasta	MAP4K1	chr19	38582641	38622953
MAP4K1_chr19_38582641_38622953	0/0	t0002	166	2	0	0	0	0	2	copy fasta	MAP4K1	chr19	38582641	38622953
MAP4K2_chr11_64779918_64808214	0/1	t0001	4686	186	22	32	96	10	25	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	t0002	4680	45	0	9	36	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	t0003	4680	29	6	1	11	2	9	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	t0004	4685	15	12	2	0	1	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	t0005	4685	14	13	1	0	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	1/0	t0006	4685	11	9	1	0	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	t0007	4687	5	5	0	0	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	t0008	4687	5	0	0	5	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	t0009	4680	4	2	2	0	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	t0010	4686	4	0	0	0	0	4	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	t0011	4685	3	3	0	0	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	t0012	4686	3	0	3	0	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	t0013	4686	3	0	0	3	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	t0014	4680	2	2	0	0	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	t0015	4652	2	0	2	0	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	t0016	4681	2	0	0	2	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	t0017	4686	2	1	1	0	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	t0018	4686	2	0	0	0	0	2	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	t0019	4687	2	2	0	0	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	t0020	4679	2	1	0	0	1	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	t0021	4680	2	2	0	0	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	t0022	4686	2	0	2	0	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	t0023	4685	2	2	0	0	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	t0024	4680	1	1	0	0	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	t0025	4686	1	1	0	0	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	t0026	4686	1	1	0	0	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	t0027	4687	1	1	0	0	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	t0028	4686	1	1	0	0	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	t0029	4680	1	0	0	1	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	t0030	4604	1	0	1	0	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	t0031	4685	1	0	0	1	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	t0032	4686	1	0	0	1	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	t0033	4686	1	1	0	0	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	t0034	4686	1	1	0	0	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	t0035	4686	1	0	0	0	0	1	copy fasta	MAP4K2	chr11	64779918	64808214