JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAP4K2_chr11_64779918_64808214	0/0	t0036	4687	1	1	0	0	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	t0037	4686	1	0	0	1	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	t0038	4686	1	0	0	1	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	t0039	4680	1	0	0	1	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	t0040	4685	1	1	0	0	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	t0041	4686	1	0	1	0	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	t0042	4685	1	1	0	0	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	t0043	4686	1	0	0	0	0	1	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	t0044	4686	1	0	0	1	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K3_chr2_39244266_39442285	0/1	t0001	1651	83	10	22	29	4	17	copy fasta	MAP4K3	chr2	39244266	39442285
MAP4K3_chr2_39244266_39442285	1/0	t0002	1651	69	21	15	23	0	9	copy fasta	MAP4K3	chr2	39244266	39442285
MAP4K3_chr2_39244266_39442285	0/0	t0003	1651	24	22	2	0	0	0	copy fasta	MAP4K3	chr2	39244266	39442285
MAP4K3_chr2_39244266_39442285	0/0	t0004	1657	15	0	1	10	1	3	copy fasta	MAP4K3	chr2	39244266	39442285
MAP4K3_chr2_39244266_39442285	0/0	t0005	1651	14	14	0	0	0	0	copy fasta	MAP4K3	chr2	39244266	39442285
MAP4K3_chr2_39244266_39442285	0/0	t0006	1651	8	0	1	7	0	0	copy fasta	MAP4K3	chr2	39244266	39442285
MAP4K3_chr2_39244266_39442285	0/0	t0007	1657	4	2	1	1	0	0	copy fasta	MAP4K3	chr2	39244266	39442285
MAP4K3_chr2_39244266_39442285	0/0	t0008	1651	3	0	2	0	1	0	copy fasta	MAP4K3	chr2	39244266	39442285
MAP4K3_chr2_39244266_39442285	0/0	t0009	1651	3	2	0	1	0	0	copy fasta	MAP4K3	chr2	39244266	39442285
MAP4K3_chr2_39244266_39442285	0/0	t0010	1654	3	0	0	2	0	1	copy fasta	MAP4K3	chr2	39244266	39442285
MAP4K3_chr2_39244266_39442285	0/0	t0011	1651	1	1	0	0	0	0	copy fasta	MAP4K3	chr2	39244266	39442285
MAP4K3_chr2_39244266_39442285	0/0	t0012	1651	1	1	0	0	0	0	copy fasta	MAP4K3	chr2	39244266	39442285
MAP4K3_chr2_39244266_39442285	0/0	t0013	1651	1	1	0	0	0	0	copy fasta	MAP4K3	chr2	39244266	39442285
MAP4K3_chr2_39244266_39442285	0/0	t0014	1651	1	1	0	0	0	0	copy fasta	MAP4K3	chr2	39244266	39442285
MAP4K3_chr2_39244266_39442285	0/0	t0015	1651	1	1	0	0	0	0	copy fasta	MAP4K3	chr2	39244266	39442285
MAP4K3_chr2_39244266_39442285	0/0	t0016	1654	1	0	0	1	0	0	copy fasta	MAP4K3	chr2	39244266	39442285
MAP4K4_chr2_101692707_101899690	0/0	t0001	3814	55	4	14	32	1	4	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0002	3820	34	0	6	22	0	6	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0003	3815	23	7	5	8	1	2	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/1	t0004	3818	23	10	8	3	0	1	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0005	3822	22	7	1	6	3	5	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0006	3815	19	1	2	10	2	4	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0007	3816	11	10	1	0	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	1/0	t0008	3816	10	1	4	3	0	1	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0009	3818	10	10	0	0	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0010	3816	8	0	4	3	0	1	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0011	3816	6	5	1	0	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0012	3815	6	4	0	1	0	1	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0013	3817	5	5	0	0	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0014	3817	5	4	1	0	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0015	3821	5	0	1	4	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0016	3818	4	0	0	4	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0017	3816	4	4	0	0	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0018	3814	4	0	2	0	2	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0019	3823	4	0	0	3	0	1	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0020	3819	4	0	0	3	0	1	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0021	3819	3	3	0	0	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0022	3817	3	3	0	0	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0023	3822	3	0	0	3	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0024	3822	3	0	0	1	0	2	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0025	3814	2	0	0	1	0	1	copy fasta	MAP4K4	chr2	101692707	101899690