JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAP4K4_chr2_101692707_101899690	0/0	t0026	3817	2	2	0	0	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0027	3821	2	1	0	1	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0028	3819	2	2	0	0	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0029	3821	2	0	1	1	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0030	3820	2	0	1	0	1	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0031	3820	2	0	0	1	0	1	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0032	3820	2	0	0	2	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0033	3815	1	0	0	1	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0034	3815	1	1	0	0	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0035	3814	1	0	0	1	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0036	3819	1	1	0	0	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0037	3820	1	1	0	0	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0038	3817	1	1	0	0	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0039	3818	1	1	0	0	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0040	3818	1	1	0	0	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0041	3816	1	1	0	0	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0042	3816	1	1	0	0	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0043	3815	1	1	0	0	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0044	3814	1	0	1	0	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0045	3814	1	0	0	1	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0046	3816	1	1	0	0	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0047	3818	1	1	0	0	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0048	3823	1	0	0	1	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0049	3822	1	0	0	0	0	1	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0050	3821	1	0	0	1	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0051	3820	1	0	0	1	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	t0052	3820	1	0	1	0	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K5_chr14_50413521_50537569	1/1	t0001	1730	199	78	48	57	3	11	copy fasta	MAP4K5	chr14	50413521	50537569
MAP4K5_chr14_50413521_50537569	0/0	t0002	1730	16	0	7	5	1	3	copy fasta	MAP4K5	chr14	50413521	50537569
MAP4K5_chr14_50413521_50537569	0/0	t0003	1730	14	0	0	14	0	0	copy fasta	MAP4K5	chr14	50413521	50537569
MAP4K5_chr14_50413521_50537569	0/0	t0004	1728	2	0	0	0	0	2	copy fasta	MAP4K5	chr14	50413521	50537569
MAP4K5_chr14_50413521_50537569	0/0	t0005	1730	2	0	0	2	0	0	copy fasta	MAP4K5	chr14	50413521	50537569
MAP4K5_chr14_50413521_50537569	0/0	t0006	1730	1	0	0	1	0	0	copy fasta	MAP4K5	chr14	50413521	50537569
MAP4K5_chr14_50413521_50537569	0/0	t0007	1730	1	0	1	0	0	0	copy fasta	MAP4K5	chr14	50413521	50537569
MAP4K5_chr14_50413521_50537569	0/0	t0008	1730	1	1	0	0	0	0	copy fasta	MAP4K5	chr14	50413521	50537569
MAP4K5_chr14_50413521_50537569	0/0	t0009	1730	1	1	0	0	0	0	copy fasta	MAP4K5	chr14	50413521	50537569
MAP4K5_chr14_50413521_50537569	0/0	t0010	1730	1	1	0	0	0	0	copy fasta	MAP4K5	chr14	50413521	50537569
MAP4K5_chr14_50413521_50537569	0/0	t0011	1730	1	1	0	0	0	0	copy fasta	MAP4K5	chr14	50413521	50537569
MAP4K5_chr14_50413521_50537569	0/0	t0012	1730	1	0	0	1	0	0	copy fasta	MAP4K5	chr14	50413521	50537569
MAP4_chr3_47845695_48021416	1/0	t0001	2342	91	14	18	43	4	11	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/1	t0002	2345	73	16	17	28	2	9	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	t0003	2345	21	20	1	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	t0004	2345	9	0	0	9	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	t0005	2345	5	0	0	4	0	1	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	t0006	2345	4	1	3	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	t0007	2345	4	4	0	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	t0008	2345	3	2	1	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	t0009	2342	2	2	0	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	t0010	2345	2	2	0	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	t0011	2345	2	2	0	0	0	0	copy fasta	MAP4	chr3	47845695	48021416