JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAP4_chr3_47845695_48021416	0/0	t0012	2345	2	2	0	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	t0013	2342	1	0	0	0	0	1	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	t0014	2345	1	0	0	0	0	1	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	t0015	2342	1	0	1	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	t0016	2342	1	0	0	0	0	1	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	t0017	2342	1	1	0	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	t0018	2344	1	1	0	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	t0019	2344	1	1	0	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	t0020	2345	1	1	0	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	t0021	2345	1	0	1	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	t0022	2345	1	0	0	1	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	t0023	2345	1	1	0	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	t0024	2342	1	0	0	1	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	t0025	2344	1	1	0	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	t0026	2342	1	1	0	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP6D1_chr3_183810922_183830577	0/1	t0001	1465	193	30	30	105	6	21	copy fasta	MAP6D1	chr3	183810922	183830577
MAP6D1_chr3_183810922_183830577	1/0	t0002	1465	90	28	23	7	12	19	copy fasta	MAP6D1	chr3	183810922	183830577
MAP6D1_chr3_183810922_183830577	0/0	t0003	1465	77	13	20	41	0	3	copy fasta	MAP6D1	chr3	183810922	183830577
MAP6D1_chr3_183810922_183830577	0/0	t0004	1465	25	0	5	20	0	0	copy fasta	MAP6D1	chr3	183810922	183830577
MAP6D1_chr3_183810922_183830577	0/0	t0005	1465	21	1	0	17	0	3	copy fasta	MAP6D1	chr3	183810922	183830577
MAP6D1_chr3_183810922_183830577	0/0	t0006	1469	16	0	1	15	0	0	copy fasta	MAP6D1	chr3	183810922	183830577
MAP6D1_chr3_183810922_183830577	0/0	t0007	1465	9	8	1	0	0	0	copy fasta	MAP6D1	chr3	183810922	183830577
MAP6D1_chr3_183810922_183830577	0/0	t0008	1465	7	7	0	0	0	0	copy fasta	MAP6D1	chr3	183810922	183830577
MAP6D1_chr3_183810922_183830577	0/0	t0009	1465	4	0	0	4	0	0	copy fasta	MAP6D1	chr3	183810922	183830577
MAP6D1_chr3_183810922_183830577	0/0	t0010	1460	4	0	0	4	0	0	copy fasta	MAP6D1	chr3	183810922	183830577
MAP6D1_chr3_183810922_183830577	0/0	t0011	1465	3	2	1	0	0	0	copy fasta	MAP6D1	chr3	183810922	183830577
MAP6D1_chr3_183810922_183830577	0/0	t0012	1466	3	3	0	0	0	0	copy fasta	MAP6D1	chr3	183810922	183830577
MAP6D1_chr3_183810922_183830577	0/0	t0013	1465	2	0	0	2	0	0	copy fasta	MAP6D1	chr3	183810922	183830577
MAP6D1_chr3_183810922_183830577	0/0	t0014	1465	1	0	0	1	0	0	copy fasta	MAP6D1	chr3	183810922	183830577
MAP6D1_chr3_183810922_183830577	0/0	t0015	1465	1	0	0	1	0	0	copy fasta	MAP6D1	chr3	183810922	183830577
MAP6D1_chr3_183810922_183830577	0/0	t0016	1465	1	0	0	1	0	0	copy fasta	MAP6D1	chr3	183810922	183830577
MAP6D1_chr3_183810922_183830577	0/0	t0017	1465	1	0	0	1	0	0	copy fasta	MAP6D1	chr3	183810922	183830577
MAP6D1_chr3_183810922_183830577	0/0	t0018	1465	1	0	0	1	0	0	copy fasta	MAP6D1	chr3	183810922	183830577
MAP6D1_chr3_183810922_183830577	0/0	t0019	1465	1	0	1	0	0	0	copy fasta	MAP6D1	chr3	183810922	183830577
MAP6D1_chr3_183810922_183830577	0/0	t0020	1465	1	0	0	1	0	0	copy fasta	MAP6D1	chr3	183810922	183830577
MAP6D1_chr3_183810922_183830577	0/0	t0021	1465	1	0	0	1	0	0	copy fasta	MAP6D1	chr3	183810922	183830577
MAP6_chr11_75581918_75674038	1/1	t0001	811	389	83	58	194	12	40	copy fasta	MAP6	chr11	75581918	75674038
MAP6_chr11_75581918_75674038	0/0	t0002	811	1	1	0	0	0	0	copy fasta	MAP6	chr11	75581918	75674038
MAP7D1_chr1_36151160_36185849	1/1	t0001	850	288	72	60	109	13	32	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	t0002	850	73	6	16	45	0	6	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	t0003	850	5	0	0	5	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	t0004	850	2	0	0	2	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	t0005	850	1	0	0	1	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	t0006	850	1	0	0	1	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	t0007	845	1	0	0	1	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	t0008	850	1	0	0	1	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	t0009	850	1	0	0	0	1	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	t0010	850	1	0	0	1	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	t0011	850	1	0	0	1	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	t0012	845	1	0	0	1	0	0	copy fasta	MAP7D1	chr1	36151160	36185849