JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAP7D1_chr1_36151160_36185849	0/0	t0013	850	1	1	0	0	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	t0014	845	1	1	0	0	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D2_chrX_20001713_20121907	1/1	t0001	1741	194	59	40	70	7	16	copy fasta	MAP7D2	chrX	20001713	20121907
MAP7D2_chrX_20001713_20121907	0/0	t0002	1741	5	4	1	0	0	0	copy fasta	MAP7D2	chrX	20001713	20121907
MAP7D2_chrX_20001713_20121907	0/0	t0003	1741	4	0	0	1	0	3	copy fasta	MAP7D2	chrX	20001713	20121907
MAP7D2_chrX_20001713_20121907	0/0	t0004	1743	1	0	1	0	0	0	copy fasta	MAP7D2	chrX	20001713	20121907
MAP7D2_chrX_20001713_20121907	0/0	t0005	1741	1	0	1	0	0	0	copy fasta	MAP7D2	chrX	20001713	20121907
MAP7D2_chrX_20001713_20121907	0/0	t0006	1740	1	0	0	1	0	0	copy fasta	MAP7D2	chrX	20001713	20121907
MAP7D2_chrX_20001713_20121907	0/0	t0007	1741	1	1	0	0	0	0	copy fasta	MAP7D2	chrX	20001713	20121907
MAP7D2_chrX_20001713_20121907	0/0	t0008	1742	1	0	0	1	0	0	copy fasta	MAP7D2	chrX	20001713	20121907
MAP7D2_chrX_20001713_20121907	0/0	t0009	1741	1	1	0	0	0	0	copy fasta	MAP7D2	chrX	20001713	20121907
MAP7D2_chrX_20001713_20121907	0/0	t0010	1764	1	1	0	0	0	0	copy fasta	MAP7D2	chrX	20001713	20121907
MAP7D3_chrX_136211814_136256400	1/0	t0001	1755	129	40	23	44	6	15	copy fasta	MAP7D3	chrX	136211814	136256400
MAP7D3_chrX_136211814_136256400	0/1	t0002	1755	114	7	24	65	5	12	copy fasta	MAP7D3	chrX	136211814	136256400
MAP7D3_chrX_136211814_136256400	0/0	t0003	1755	11	10	1	0	0	0	copy fasta	MAP7D3	chrX	136211814	136256400
MAP7D3_chrX_136211814_136256400	0/0	t0004	1756	5	5	0	0	0	0	copy fasta	MAP7D3	chrX	136211814	136256400
MAP7D3_chrX_136211814_136256400	0/0	t0005	1755	4	0	0	4	0	0	copy fasta	MAP7D3	chrX	136211814	136256400
MAP7D3_chrX_136211814_136256400	0/0	t0006	1756	3	0	0	2	0	1	copy fasta	MAP7D3	chrX	136211814	136256400
MAP7D3_chrX_136211814_136256400	0/0	t0007	1755	2	0	0	2	0	0	copy fasta	MAP7D3	chrX	136211814	136256400
MAP7D3_chrX_136211814_136256400	0/0	t0008	1755	1	0	1	0	0	0	copy fasta	MAP7D3	chrX	136211814	136256400
MAP7D3_chrX_136211814_136256400	0/0	t0009	1755	1	0	0	1	0	0	copy fasta	MAP7D3	chrX	136211814	136256400
MAP7D3_chrX_136211814_136256400	0/0	t0010	1755	1	0	0	1	0	0	copy fasta	MAP7D3	chrX	136211814	136256400
MAP7D3_chrX_136211814_136256400	0/0	t0011	1755	1	0	0	1	0	0	copy fasta	MAP7D3	chrX	136211814	136256400
MAP7D3_chrX_136211814_136256400	0/0	t0012	1756	1	1	0	0	0	0	copy fasta	MAP7D3	chrX	136211814	136256400
MAP7D3_chrX_136211814_136256400	0/0	t0013	1757	1	1	0	0	0	0	copy fasta	MAP7D3	chrX	136211814	136256400
MAP7D3_chrX_136211814_136256400	0/0	t0014	1755	1	0	0	1	0	0	copy fasta	MAP7D3	chrX	136211814	136256400
MAP7D3_chrX_136211814_136256400	0/0	t0015	1755	1	0	0	1	0	0	copy fasta	MAP7D3	chrX	136211814	136256400
MAP7_chr6_136337734_136555422	0/1	t0001	1509	92	22	17	46	1	5	copy fasta	MAP7	chr6	136337734	136555422
MAP7_chr6_136337734_136555422	1/0	t0002	1509	64	13	7	35	1	7	copy fasta	MAP7	chr6	136337734	136555422
MAP7_chr6_136337734_136555422	0/0	t0003	1510	43	4	9	30	0	0	copy fasta	MAP7	chr6	136337734	136555422
MAP7_chr6_136337734_136555422	0/0	t0004	1511	24	4	6	14	0	0	copy fasta	MAP7	chr6	136337734	136555422
MAP7_chr6_136337734_136555422	0/0	t0005	1511	6	0	0	6	0	0	copy fasta	MAP7	chr6	136337734	136555422
MAP7_chr6_136337734_136555422	0/0	t0006	1510	5	5	0	0	0	0	copy fasta	MAP7	chr6	136337734	136555422
MAP7_chr6_136337734_136555422	0/0	t0007	1509	4	4	0	0	0	0	copy fasta	MAP7	chr6	136337734	136555422
MAP7_chr6_136337734_136555422	0/0	t0008	1509	3	3	0	0	0	0	copy fasta	MAP7	chr6	136337734	136555422
MAP7_chr6_136337734_136555422	0/0	t0009	1509	2	0	2	0	0	0	copy fasta	MAP7	chr6	136337734	136555422
MAP7_chr6_136337734_136555422	0/0	t0010	1509	1	1	0	0	0	0	copy fasta	MAP7	chr6	136337734	136555422
MAP7_chr6_136337734_136555422	0/0	t0011	1509	1	1	0	0	0	0	copy fasta	MAP7	chr6	136337734	136555422
MAP7_chr6_136337734_136555422	0/0	t0012	1509	1	0	1	0	0	0	copy fasta	MAP7	chr6	136337734	136555422
MAP7_chr6_136337734_136555422	0/0	t0013	1509	1	1	0	0	0	0	copy fasta	MAP7	chr6	136337734	136555422
MAP7_chr6_136337734_136555422	0/0	t0014	1511	1	0	0	1	0	0	copy fasta	MAP7	chr6	136337734	136555422
MAP9_chr4_155337658_155381965	0/0	t0001	5379	93	7	15	69	0	2	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	t0002	5375	69	4	10	44	3	8	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	1/1	t0003	5385	66	2	24	18	4	16	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	t0004	5379	54	9	8	32	1	4	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	t0005	5381	34	9	0	23	0	2	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	t0006	5375	17	3	9	3	1	1	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	t0007	5379	15	15	0	0	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	t0008	5379	6	6	0	0	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	t0009	5379	6	6	0	0	0	0	copy fasta	MAP9	chr4	155337658	155381965