JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAP9_chr4_155337658_155381965	0/0	t0010	5383	6	6	0	0	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	t0011	5386	5	0	0	4	0	1	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	t0012	5379	4	4	0	0	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	t0013	5379	4	4	0	0	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	t0014	5375	4	4	0	0	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	t0015	5375	4	4	0	0	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	t0016	5381	3	0	0	3	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	t0017	5379	2	0	0	2	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	t0018	5381	2	2	0	0	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	t0019	5379	1	0	0	1	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	t0020	5379	1	0	0	0	0	1	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	t0021	5379	1	0	0	0	0	1	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	t0022	5380	1	0	0	1	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	t0023	5379	1	0	1	0	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	t0024	5379	1	0	0	1	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	t0025	5375	1	1	0	0	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	t0026	5375	1	0	0	1	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	t0027	5379	1	1	0	0	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	t0028	5375	1	1	0	0	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	t0029	5375	1	1	0	0	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	t0030	5375	1	0	1	0	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	t0031	5379	1	0	0	1	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	t0032	5379	1	0	1	0	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	t0033	5379	1	1	0	0	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	t0034	5385	1	0	0	0	0	1	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	t0035	5385	1	0	0	0	1	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	t0036	5385	1	0	0	0	0	1	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	t0037	5375	1	1	0	0	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	t0038	5380	1	0	0	1	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	t0039	5379	1	0	1	0	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	t0040	5383	1	1	0	0	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAPK10_chr4_86005405_86365053	1/0	t0001	7341	23	1	6	10	2	3	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0002	7340	6	0	0	6	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0003	7334	6	3	0	0	2	1	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0004	7347	5	0	1	2	0	2	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0005	7346	5	4	1	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0006	7339	4	4	0	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0007	7332	4	0	1	3	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0008	7322	4	1	3	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0009	7322	4	4	0	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0010	7345	3	2	1	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0011	7331	3	0	0	3	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0012	7332	3	0	0	3	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0013	7343	3	1	2	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0014	7343	3	1	1	1	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0015	7337	3	0	1	2	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0016	7339	3	0	0	3	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0017	7342	3	0	2	1	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0018	7341	3	3	0	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0019	7333	3	3	0	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053