JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAPK10_chr4_86005405_86365053	0/0	t0020	7341	2	2	0	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0021	7342	2	0	0	2	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0022	7330	2	2	0	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0023	7343	2	1	1	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0024	7339	2	0	1	1	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0025	7331	2	2	0	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/1	t0026	7323	2	0	1	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0027	7344	2	2	0	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0028	7343	2	2	0	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0029	7352	2	2	0	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0030	7344	2	2	0	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0031	7338	2	0	0	0	2	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0032	7331	2	2	0	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0033	7350	2	2	0	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0034	7342	2	2	0	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0035	7343	1	0	0	0	0	1	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0036	7343	1	0	0	0	0	1	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0037	7333	1	0	0	1	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0038	7333	1	0	1	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0039	7344	1	1	0	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0040	7349	1	0	0	0	0	1	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0041	7343	1	0	1	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0042	7339	1	0	0	0	0	1	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0043	7345	1	1	0	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0044	7343	1	1	0	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0045	7339	1	1	0	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0046	7341	1	0	0	1	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0047	7333	1	0	0	1	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0048	7341	1	0	0	0	0	1	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0049	7341	1	0	0	0	0	1	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0050	7340	1	0	0	0	0	1	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0051	7345	1	0	0	1	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0052	7341	1	0	1	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0053	7340	1	0	0	1	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0054	7345	1	0	0	1	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0055	7341	1	0	1	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0056	7341	1	0	0	0	0	1	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0057	7341	1	0	0	1	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0058	7339	1	1	0	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0059	7346	1	0	1	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0060	7345	1	0	0	1	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0061	7343	1	0	0	1	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0062	7324	1	1	0	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0063	7322	1	1	0	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0064	7341	1	0	1	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0065	7330	1	1	0	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0066	7348	1	0	1	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0067	7346	1	1	0	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0068	7342	1	0	1	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0069	7340	1	1	0	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053