JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAPK10_chr4_86005405_86365053	0/0	t0070	7332	1	1	0	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0071	7339	1	1	0	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0072	7333	1	1	0	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0073	7335	1	1	0	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0074	7353	1	0	0	0	0	1	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0075	7347	1	0	0	0	0	1	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0076	7341	1	0	0	0	0	1	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0077	7345	1	0	0	0	0	1	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0078	7348	1	1	0	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0079	7348	1	1	0	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0080	7344	1	1	0	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0081	7342	1	1	0	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0082	7342	1	1	0	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	t0083	7358	1	1	0	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK11_chr22_50258713_50275380	1/1	t0001	1324	213	32	48	98	7	26	copy fasta	MAPK11	chr22	50258713	50275380
MAPK11_chr22_50258713_50275380	0/0	t0002	1324	148	42	30	53	7	16	copy fasta	MAPK11	chr22	50258713	50275380
MAPK11_chr22_50258713_50275380	0/0	t0003	1324	29	0	4	21	2	2	copy fasta	MAPK11	chr22	50258713	50275380
MAPK11_chr22_50258713_50275380	0/0	t0004	1324	9	8	1	0	0	0	copy fasta	MAPK11	chr22	50258713	50275380
MAPK11_chr22_50258713_50275380	0/0	t0005	1324	8	7	1	0	0	0	copy fasta	MAPK11	chr22	50258713	50275380
MAPK11_chr22_50258713_50275380	0/0	t0006	1322	8	0	0	8	0	0	copy fasta	MAPK11	chr22	50258713	50275380
MAPK11_chr22_50258713_50275380	0/0	t0007	1325	4	0	0	4	0	0	copy fasta	MAPK11	chr22	50258713	50275380
MAPK11_chr22_50258713_50275380	0/0	t0008	1324	2	2	0	0	0	0	copy fasta	MAPK11	chr22	50258713	50275380
MAPK11_chr22_50258713_50275380	0/0	t0009	1325	2	0	0	1	0	1	copy fasta	MAPK11	chr22	50258713	50275380
MAPK11_chr22_50258713_50275380	0/0	t0010	1324	1	0	0	1	0	0	copy fasta	MAPK11	chr22	50258713	50275380
MAPK11_chr22_50258713_50275380	0/0	t0011	1324	1	1	0	0	0	0	copy fasta	MAPK11	chr22	50258713	50275380
MAPK11_chr22_50258713_50275380	0/0	t0012	1324	1	0	0	0	0	1	copy fasta	MAPK11	chr22	50258713	50275380
MAPK11_chr22_50258713_50275380	0/0	t0013	1324	1	1	0	0	0	0	copy fasta	MAPK11	chr22	50258713	50275380
MAPK11_chr22_50258713_50275380	0/0	t0014	1324	1	1	0	0	0	0	copy fasta	MAPK11	chr22	50258713	50275380
MAPK12_chr22_50247901_50266683	1/1	t0001	675	270	49	56	120	8	35	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	0/0	t0002	675	103	39	18	31	10	5	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	0/0	t0003	667	26	0	6	20	0	0	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	0/0	t0004	675	22	0	4	15	0	3	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	0/0	t0005	675	8	8	0	0	0	0	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	0/0	t0006	675	5	0	0	5	0	0	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	0/0	t0007	675	3	0	0	2	0	1	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	0/0	t0008	675	2	2	0	0	0	0	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	0/0	t0009	675	2	0	2	0	0	0	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	0/0	t0010	667	1	0	0	1	0	0	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	0/0	t0011	675	1	0	0	0	0	1	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	0/0	t0012	675	1	0	0	0	0	1	copy fasta	MAPK12	chr22	50247901	50266683
MAPK13_chr6_36125513_36149521	0/0	t0001	5215	97	6	23	52	3	13	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/1	t0002	5215	95	3	20	62	1	8	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	t0003	5215	66	40	10	12	0	4	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	t0004	5215	52	11	13	10	5	13	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	t0005	5211	19	0	0	19	0	0	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	t0006	5215	10	5	1	4	0	0	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	t0007	5215	7	3	1	1	0	2	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	t0008	5211	6	5	1	0	0	0	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	t0009	5215	6	0	0	5	0	1	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	t0010	5215	5	0	0	5	0	0	copy fasta	MAPK13	chr6	36125513	36149521