JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAPK13_chr6_36125513_36149521	0/0	t0011	5215	5	3	1	0	1	0	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	1/0	t0012	5219	5	1	2	0	0	1	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	t0013	5215	4	0	0	4	0	0	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	t0014	5215	4	1	0	0	1	2	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	t0015	5215	4	0	0	4	0	0	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	t0016	5215	3	0	1	0	2	0	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	t0017	5215	3	1	2	0	0	0	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	t0018	5215	3	0	2	0	1	0	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	t0019	5215	3	3	0	0	0	0	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	t0020	5215	3	3	0	0	0	0	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	t0021	5215	2	2	0	0	0	0	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	t0022	5215	2	0	0	2	0	0	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	t0023	5215	2	0	2	0	0	0	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	t0024	5215	1	0	0	1	0	0	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	t0025	5211	1	0	0	1	0	0	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	t0026	5215	1	1	0	0	0	0	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	t0027	5215	1	0	0	1	0	0	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	t0028	5215	1	0	0	1	0	0	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	t0029	5215	1	0	1	0	0	0	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	t0030	5215	1	1	0	0	0	0	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	t0031	5215	1	0	0	0	0	1	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	t0032	5215	1	1	0	0	0	0	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	t0033	5215	1	0	0	1	0	0	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	t0034	5215	1	1	0	0	0	0	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	t0035	5215	1	0	0	0	0	1	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	t0036	5215	1	1	0	0	0	0	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	t0037	5215	1	1	0	0	0	0	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	t0038	5215	1	1	0	0	0	0	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	t0039	5215	1	0	0	1	0	0	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	t0040	5215	1	1	0	0	0	0	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	t0041	5215	1	1	0	0	0	0	copy fasta	MAPK13	chr6	36125513	36149521
MAPK14_chr6_36022808_36116236	0/1	t0001	3141	107	40	20	28	4	14	copy fasta	MAPK14	chr6	36022808	36116236
MAPK14_chr6_36022808_36116236	0/0	t0002	3141	76	0	15	57	0	4	copy fasta	MAPK14	chr6	36022808	36116236
MAPK14_chr6_36022808_36116236	0/0	t0003	3131	45	0	10	34	1	0	copy fasta	MAPK14	chr6	36022808	36116236
MAPK14_chr6_36022808_36116236	0/0	t0004	3141	33	7	9	11	3	3	copy fasta	MAPK14	chr6	36022808	36116236
MAPK14_chr6_36022808_36116236	0/0	t0005	3141	31	11	0	16	1	3	copy fasta	MAPK14	chr6	36022808	36116236
MAPK14_chr6_36022808_36116236	0/0	t0006	3141	16	15	0	0	1	0	copy fasta	MAPK14	chr6	36022808	36116236
MAPK14_chr6_36022808_36116236	0/0	t0007	3141	4	3	1	0	0	0	copy fasta	MAPK14	chr6	36022808	36116236
MAPK14_chr6_36022808_36116236	0/0	t0008	3141	4	0	0	4	0	0	copy fasta	MAPK14	chr6	36022808	36116236
MAPK14_chr6_36022808_36116236	1/0	t0009	3140	3	0	1	0	0	1	copy fasta	MAPK14	chr6	36022808	36116236
MAPK14_chr6_36022808_36116236	0/0	t0010	3141	2	2	0	0	0	0	copy fasta	MAPK14	chr6	36022808	36116236
MAPK14_chr6_36022808_36116236	0/0	t0011	3141	2	2	0	0	0	0	copy fasta	MAPK14	chr6	36022808	36116236
MAPK14_chr6_36022808_36116236	0/0	t0012	3141	2	2	0	0	0	0	copy fasta	MAPK14	chr6	36022808	36116236
MAPK14_chr6_36022808_36116236	0/0	t0013	3142	2	0	0	2	0	0	copy fasta	MAPK14	chr6	36022808	36116236
MAPK14_chr6_36022808_36116236	0/0	t0014	3141	2	0	1	1	0	0	copy fasta	MAPK14	chr6	36022808	36116236
MAPK14_chr6_36022808_36116236	0/0	t0015	3141	1	1	0	0	0	0	copy fasta	MAPK14	chr6	36022808	36116236
MAPK14_chr6_36022808_36116236	0/0	t0016	3142	1	1	0	0	0	0	copy fasta	MAPK14	chr6	36022808	36116236
MAPK14_chr6_36022808_36116236	0/0	t0017	3132	1	0	0	1	0	0	copy fasta	MAPK14	chr6	36022808	36116236
MAPK14_chr6_36022808_36116236	0/0	t0018	3141	1	0	0	0	0	1	copy fasta	MAPK14	chr6	36022808	36116236
MAPK14_chr6_36022808_36116236	0/0	t0019	3141	1	0	1	0	0	0	copy fasta	MAPK14	chr6	36022808	36116236