JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAPK14_chr6_36022808_36116236	0/0	t0020	3141	1	0	0	1	0	0	copy fasta	MAPK14	chr6	36022808	36116236
MAPK14_chr6_36022808_36116236	0/0	t0021	3141	1	1	0	0	0	0	copy fasta	MAPK14	chr6	36022808	36116236
MAPK14_chr6_36022808_36116236	0/0	t0022	3141	1	1	0	0	0	0	copy fasta	MAPK14	chr6	36022808	36116236
MAPK14_chr6_36022808_36116236	0/0	t0023	3141	1	1	0	0	0	0	copy fasta	MAPK14	chr6	36022808	36116236
MAPK14_chr6_36022808_36116236	0/0	t0024	3141	1	1	0	0	0	0	copy fasta	MAPK14	chr6	36022808	36116236
MAPK14_chr6_36022808_36116236	0/0	t0025	3141	1	0	0	1	0	0	copy fasta	MAPK14	chr6	36022808	36116236
MAPK14_chr6_36022808_36116236	0/0	t0026	3141	1	1	0	0	0	0	copy fasta	MAPK14	chr6	36022808	36116236
MAPK14_chr6_36022808_36116236	0/0	t0027	3131	1	1	0	0	0	0	copy fasta	MAPK14	chr6	36022808	36116236
MAPK15_chr8_143711349_143727458	0/1	t0001	237	383	96	75	154	12	45	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	t0002	237	5	0	4	0	0	1	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	t0003	237	4	0	0	0	0	4	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	t0004	237	1	0	0	1	0	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	t0005	237	1	0	0	1	0	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	t0006	217	1	1	0	0	0	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	t0007	237	1	0	1	0	0	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	t0008	237	1	1	0	0	0	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK1IP1L_chr14_55046647_55075194	1/1	t0001	5729	93	9	25	39	7	11	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0002	5729	54	16	13	19	1	5	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0003	5728	50	12	6	30	0	2	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0004	5728	24	2	7	5	6	4	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0005	5728	13	1	1	11	0	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0006	5728	11	10	1	0	0	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0007	5730	9	0	0	9	0	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0008	5729	9	0	0	9	0	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0009	5730	8	0	8	0	0	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0010	5727	6	6	0	0	0	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0011	5729	6	1	0	5	0	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0012	5728	5	4	1	0	0	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0013	5729	5	4	1	0	0	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0014	5727	5	0	1	1	0	3	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0015	5725	5	1	0	2	0	2	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0016	5728	4	4	0	0	0	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0017	5728	4	0	0	4	0	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0018	5727	4	0	0	3	0	1	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0019	5729	3	3	0	0	0	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0020	5726	3	3	0	0	0	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0021	5727	3	3	0	0	0	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0022	5728	3	0	0	3	0	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0023	5727	3	3	0	0	0	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0024	5728	3	2	1	0	0	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0025	5728	2	1	0	1	0	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0026	5729	2	0	0	0	0	2	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0027	5726	2	2	0	0	0	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0028	5727	2	2	0	0	0	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0029	5727	2	0	0	2	0	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0030	5727	2	0	1	0	0	1	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0031	5729	2	0	1	1	0	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0032	5730	2	1	0	0	1	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0033	5725	2	0	0	2	0	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0034	5728	1	0	1	0	0	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194