JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAPK1IP1L_chr14_55046647_55075194	0/0	t0035	5729	1	0	0	0	0	1	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0036	5729	1	1	0	0	0	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0037	5728	1	0	0	1	0	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0038	5729	1	1	0	0	0	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0039	5725	1	1	0	0	0	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0040	5725	1	1	0	0	0	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0041	5725	1	0	1	0	0	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0042	5726	1	1	0	0	0	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0043	5727	1	0	1	0	0	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0044	5728	1	1	0	0	0	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0045	5730	1	0	0	0	0	1	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0046	5729	1	0	0	1	0	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0047	5730	1	0	0	0	0	1	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0048	5730	1	0	0	1	0	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0049	5728	1	0	0	0	0	1	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0050	5728	1	0	1	0	0	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0051	5728	1	1	0	0	0	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0052	5727	1	0	0	1	0	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0053	5728	1	0	0	0	0	1	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0054	5726	1	0	0	0	0	1	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0055	5726	1	1	0	0	0	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0056	5728	1	0	0	0	1	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0057	5729	1	0	1	0	0	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	t0058	5729	1	0	0	0	0	1	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1_chr22_21754657_21872645	1/0	t0001	4799	121	31	17	54	4	14	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0002	4802	38	0	7	31	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0003	4801	28	1	12	12	1	2	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0004	4799	22	5	10	0	1	6	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0005	4799	22	0	2	13	2	5	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0006	4803	12	0	1	10	0	1	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0007	4800	11	8	3	0	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0008	4801	9	9	0	0	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/1	t0009	4800	7	4	1	1	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0010	4799	7	1	1	2	1	2	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0011	4799	4	4	0	0	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0012	4800	4	4	0	0	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0013	4800	4	2	0	1	0	1	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0014	4799	3	0	2	0	0	1	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0015	4799	3	0	1	2	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0016	4801	3	3	0	0	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0017	4799	3	2	1	0	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0018	4799	3	3	0	0	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0019	4799	3	0	3	0	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0020	4803	2	0	1	1	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0021	4800	2	2	0	0	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0022	4799	2	2	0	0	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0023	4799	1	1	0	0	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0024	4803	1	0	0	1	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0025	4799	1	0	0	0	1	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0026	4800	1	1	0	0	0	0	copy fasta	MAPK1	chr22	21754657	21872645