JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAPK1_chr22_21754657_21872645	0/0	t0027	4802	1	1	0	0	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0028	4803	1	0	1	0	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0029	4802	1	1	0	0	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0030	4799	1	1	0	0	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0031	4803	1	0	0	1	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0032	4799	1	0	0	1	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0033	4801	1	0	0	1	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0034	4803	1	0	0	1	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0035	4800	1	0	0	1	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0036	4799	1	0	0	1	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0037	4799	1	0	0	1	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0038	4799	1	0	0	1	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0039	4799	1	1	0	0	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0040	4800	1	1	0	0	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0041	4802	1	0	0	1	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0042	4801	1	0	0	1	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0043	4802	1	0	1	0	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0044	4800	1	1	0	0	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0045	4799	1	0	0	0	0	1	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0046	4799	1	0	0	0	0	1	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0047	4800	1	0	0	1	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0048	4799	1	1	0	0	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0049	4799	1	0	1	0	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0050	4799	1	1	0	0	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0051	4800	1	1	0	0	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0052	4799	1	1	0	0	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0053	4802	1	0	1	0	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0054	4801	1	0	0	1	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0055	4799	1	0	0	1	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0056	4801	1	1	0	0	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	t0057	4799	1	0	0	1	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK3_chr16_30109105_30128220	0/0	t0001	648	237	49	48	116	5	19	copy fasta	MAPK3	chr16	30109105	30128220
MAPK3_chr16_30109105_30128220	1/1	t0002	648	123	20	13	60	6	22	copy fasta	MAPK3	chr16	30109105	30128220
MAPK3_chr16_30109105_30128220	0/0	t0003	648	14	4	7	0	3	0	copy fasta	MAPK3	chr16	30109105	30128220
MAPK3_chr16_30109105_30128220	0/0	t0004	648	8	7	1	0	0	0	copy fasta	MAPK3	chr16	30109105	30128220
MAPK3_chr16_30109105_30128220	0/0	t0005	648	1	1	0	0	0	0	copy fasta	MAPK3	chr16	30109105	30128220
MAPK3_chr16_30109105_30128220	0/0	t0006	648	1	1	0	0	0	0	copy fasta	MAPK3	chr16	30109105	30128220
MAPK3_chr16_30109105_30128220	0/0	t0007	648	1	0	0	0	0	1	copy fasta	MAPK3	chr16	30109105	30128220
MAPK3_chr16_30109105_30128220	0/0	t0008	648	1	0	0	1	0	0	copy fasta	MAPK3	chr16	30109105	30128220
MAPK3_chr16_30109105_30128220	0/0	t0009	648	1	0	0	1	0	0	copy fasta	MAPK3	chr16	30109105	30128220
MAPK3_chr16_30109105_30128220	0/0	t0010	648	1	0	1	0	0	0	copy fasta	MAPK3	chr16	30109105	30128220
MAPK4_chr18_50555087_50736826	0/1	t0001	3000	124	20	31	52	5	15	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	1/0	t0002	3000	71	32	8	20	4	6	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	t0003	3000	42	7	4	20	3	8	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	t0004	3000	6	0	0	6	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	t0005	3000	6	0	0	6	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	t0006	3000	6	1	2	3	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	t0007	3000	4	4	0	0	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	t0008	3000	4	3	1	0	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	t0009	3000	4	0	0	4	0	0	copy fasta	MAPK4	chr18	50555087	50736826