JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAPK4_chr18_50555087_50736826	0/0	t0010	3000	3	3	0	0	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	t0011	3000	3	3	0	0	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	t0012	3000	2	1	0	0	0	1	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	t0013	3000	2	0	2	0	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	t0014	3000	2	2	0	0	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	t0015	3000	2	2	0	0	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	t0016	2993	1	0	0	0	0	1	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	t0017	3000	1	0	0	1	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	t0018	3000	1	0	0	1	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	t0019	3000	1	0	0	1	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	t0020	3000	1	0	0	1	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	t0021	2981	1	0	0	0	0	1	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	t0022	3000	1	0	0	0	0	1	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	t0023	3000	1	1	0	0	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	t0024	3000	1	1	0	0	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	t0025	3000	1	0	0	1	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	t0026	3000	1	0	0	1	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	t0027	3000	1	0	0	0	0	1	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	t0028	3000	1	1	0	0	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	t0029	3000	1	0	0	1	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	t0030	3000	1	0	0	1	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	t0031	3000	1	0	0	1	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	t0032	3000	1	1	0	0	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	t0033	3000	1	0	1	0	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	t0034	3000	1	1	0	0	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	t0035	3000	1	0	1	0	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	t0036	3000	1	1	0	0	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK6_chr15_52014219_52072375	0/0	t0001	3151	100	11	8	63	0	18	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0002	3159	64	6	16	30	6	6	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	1/0	t0003	3165	19	6	0	12	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0004	3157	19	4	1	12	0	2	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0005	3156	15	0	8	5	0	2	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0006	3161	14	1	5	3	0	5	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0007	3151	9	0	7	1	0	1	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0008	3156	8	0	4	4	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0009	3160	8	8	0	0	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0010	3163	7	0	0	5	1	1	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/1	t0011	3159	7	2	1	0	0	3	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0012	3157	6	5	1	0	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0013	3153	6	0	4	0	1	1	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0014	3148	5	3	2	0	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0015	3149	4	1	3	0	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0016	3159	4	0	1	0	1	2	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0017	3159	4	0	2	0	2	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0018	3146	3	0	0	3	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0019	3152	3	1	2	0	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0020	3159	3	3	0	0	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0021	3159	2	2	0	0	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0022	3159	2	0	0	2	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0023	3167	2	0	1	1	0	0	copy fasta	MAPK6	chr15	52014219	52072375