JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAPK6_chr15_52014219_52072375	0/0	t0024	3160	2	2	0	0	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0025	3147	2	2	0	0	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0026	3150	2	2	0	0	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0027	3156	2	2	0	0	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0028	3159	2	2	0	0	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0029	3163	2	0	0	0	1	1	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0030	3158	2	1	0	1	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0031	3151	2	0	0	2	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0032	3160	2	2	0	0	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0033	3159	1	1	0	0	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0034	3157	1	1	0	0	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0035	3159	1	1	0	0	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0036	3157	1	1	0	0	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0037	3159	1	0	1	0	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0038	3151	1	1	0	0	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0039	3151	1	0	0	1	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0040	3151	1	0	0	1	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0041	3151	1	1	0	0	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0042	3151	1	0	1	0	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0043	3153	1	0	0	1	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0044	3161	1	1	0	0	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0045	3151	1	0	0	1	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0046	3095	1	0	1	0	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0047	3150	1	1	0	0	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0048	3158	1	1	0	0	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0049	3166	1	1	0	0	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0050	3155	1	0	0	1	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0051	3159	1	0	0	0	0	1	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0052	3163	1	1	0	0	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0053	3169	1	1	0	0	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0054	3151	1	0	0	1	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0055	3151	1	0	0	0	0	1	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	t0056	3157	1	0	1	0	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK7_chr17_19373498_19388544	1/0	t0001	452	305	85	38	144	3	34	copy fasta	MAPK7	chr17	19373498	19388544
MAPK7_chr17_19373498_19388544	0/1	t0002	452	57	5	30	0	9	12	copy fasta	MAPK7	chr17	19373498	19388544
MAPK8IP1_chr11_45880651_45911465	1/1	t0001	915	384	92	79	145	18	48	copy fasta	MAPK8IP1	chr11	45880651	45911465
MAPK8IP1_chr11_45880651_45911465	0/0	t0002	936	1	0	0	1	0	0	copy fasta	MAPK8IP1	chr11	45880651	45911465
MAPK8IP1_chr11_45880651_45911465	0/0	t0003	989	1	0	0	1	0	0	copy fasta	MAPK8IP1	chr11	45880651	45911465
MAPK8IP1_chr11_45880651_45911465	0/0	t0004	915	1	0	1	0	0	0	copy fasta	MAPK8IP1	chr11	45880651	45911465
MAPK8IP1_chr11_45880651_45911465	0/0	t0005	915	1	1	0	0	0	0	copy fasta	MAPK8IP1	chr11	45880651	45911465
MAPK8IP1_chr11_45880651_45911465	0/0	t0006	915	1	1	0	0	0	0	copy fasta	MAPK8IP1	chr11	45880651	45911465
MAPK8IP1_chr11_45880651_45911465	0/0	t0007	915	1	1	0	0	0	0	copy fasta	MAPK8IP1	chr11	45880651	45911465
MAPK8IP1_chr11_45880651_45911465	0/0	t0008	915	1	0	0	1	0	0	copy fasta	MAPK8IP1	chr11	45880651	45911465
MAPK8IP1_chr11_45880651_45911465	0/0	t0009	915	1	1	0	0	0	0	copy fasta	MAPK8IP1	chr11	45880651	45911465
MAPK8IP2_chr22_50595793_50618978	0/0	t0001	3268	122	12	29	64	8	9	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0002	3268	80	22	19	33	0	6	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0003	3247	62	7	7	41	1	6	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0004	3226	50	0	8	31	1	10	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0005	3226	44	17	10	9	0	8	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0006	3226	9	0	0	9	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978