JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAPK8IP2_chr22_50595793_50618978	0/0	t0007	3268	9	0	0	5	2	2	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0008	3268	5	1	1	1	2	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0009	3247	5	1	1	3	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0010	3269	4	4	0	0	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0011	3268	4	4	0	0	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0012	3247	3	0	1	1	0	1	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0013	3289	3	1	0	0	0	2	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0014	3247	3	0	1	1	0	1	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0015	3247	2	2	0	0	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0016	3268	1	1	0	0	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0017	3268	1	1	0	0	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0018	3268	1	1	0	0	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0019	3289	1	0	0	1	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0020	3268	1	0	0	0	0	1	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0021	3247	1	0	0	0	0	1	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0022	3268	1	0	1	0	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0023	3226	1	0	0	1	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0024	3247	1	1	0	0	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0025	3226	1	1	0	0	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0026	3247	1	0	0	1	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0027	3247	1	0	0	1	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0028	3268	1	0	1	0	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0029	3268	1	0	0	1	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0030	3289	1	0	1	0	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0031	3284	1	0	0	0	0	1	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0032	3289	1	0	1	0	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0033	3268	1	1	0	0	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0034	3268	1	1	0	0	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0035	3268	1	0	0	1	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0036	3268	1	0	0	0	0	1	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0037	3247	1	1	0	0	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0038	3268	1	1	0	0	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0039	3247	1	0	0	0	0	1	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0040	3268	1	0	0	1	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0041	3268	1	1	0	0	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0042	3268	1	1	0	0	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0043	3247	1	0	0	1	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0044	3268	1	1	0	0	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0045	3268	1	0	1	0	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	t0046	3289	1	1	0	0	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP3_chr16_1701195_1775351	0/0	t0001	1673	101	33	28	27	0	13	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	t0002	1673	98	18	22	43	5	10	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/1	t0003	1673	53	1	7	39	1	4	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	t0004	1673	17	1	3	6	1	6	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	t0005	1673	13	6	0	7	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	t0006	1673	7	7	0	0	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	t0007	1673	6	5	0	1	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	t0008	1674	4	0	1	3	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	t0009	1673	4	0	0	4	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	t0010	1673	3	3	0	0	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351