JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAPK8IP3_chr16_1701195_1775351	0/0	t0011	1673	3	3	0	0	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	t0012	1673	3	0	0	3	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	t0013	1673	2	2	0	0	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	t0014	1673	1	0	0	1	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	t0015	1674	1	0	0	1	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	1/0	t0016	1673	1	0	0	0	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	t0017	1673	1	0	0	0	0	1	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	t0018	1673	1	0	0	1	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	t0019	1673	1	0	0	1	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	t0020	1673	1	0	0	1	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	t0021	1673	1	0	1	0	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	t0022	1673	1	0	0	1	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	t0023	1673	1	0	0	1	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	t0024	1673	1	1	0	0	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	t0025	1673	1	1	0	0	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	t0026	1673	1	0	0	1	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	t0027	1673	1	1	0	0	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	t0028	1673	1	0	0	0	1	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	t0029	1674	1	0	0	1	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8_chr10_48301677_48444360	0/0	t0001	4526	102	19	17	58	2	6	copy fasta	MAPK8	chr10	48301677	48444360
MAPK8_chr10_48301677_48444360	0/0	t0002	4526	49	2	10	27	4	6	copy fasta	MAPK8	chr10	48301677	48444360
MAPK8_chr10_48301677_48444360	0/0	t0003	4526	23	22	1	0	0	0	copy fasta	MAPK8	chr10	48301677	48444360
MAPK8_chr10_48301677_48444360	0/0	t0004	4524	23	7	3	11	1	1	copy fasta	MAPK8	chr10	48301677	48444360
MAPK8_chr10_48301677_48444360	0/0	t0005	4526	21	0	0	20	0	1	copy fasta	MAPK8	chr10	48301677	48444360
MAPK8_chr10_48301677_48444360	0/0	t0006	4527	21	2	12	2	2	3	copy fasta	MAPK8	chr10	48301677	48444360
MAPK8_chr10_48301677_48444360	1/0	t0007	4526	17	12	1	0	0	3	copy fasta	MAPK8	chr10	48301677	48444360
MAPK8_chr10_48301677_48444360	0/0	t0008	4526	5	5	0	0	0	0	copy fasta	MAPK8	chr10	48301677	48444360
MAPK8_chr10_48301677_48444360	0/0	t0009	4526	5	4	1	0	0	0	copy fasta	MAPK8	chr10	48301677	48444360
MAPK8_chr10_48301677_48444360	0/0	t0010	4526	5	3	2	0	0	0	copy fasta	MAPK8	chr10	48301677	48444360
MAPK8_chr10_48301677_48444360	0/0	t0011	4526	4	4	0	0	0	0	copy fasta	MAPK8	chr10	48301677	48444360
MAPK8_chr10_48301677_48444360	0/0	t0012	4526	3	0	0	3	0	0	copy fasta	MAPK8	chr10	48301677	48444360
MAPK8_chr10_48301677_48444360	0/0	t0013	4526	2	1	1	0	0	0	copy fasta	MAPK8	chr10	48301677	48444360
MAPK8_chr10_48301677_48444360	0/0	t0014	4526	2	0	0	2	0	0	copy fasta	MAPK8	chr10	48301677	48444360
MAPK8_chr10_48301677_48444360	0/0	t0015	4526	2	0	0	0	0	2	copy fasta	MAPK8	chr10	48301677	48444360
MAPK8_chr10_48301677_48444360	0/0	t0016	4526	2	2	0	0	0	0	copy fasta	MAPK8	chr10	48301677	48444360
MAPK8_chr10_48301677_48444360	0/0	t0017	4526	2	0	0	2	0	0	copy fasta	MAPK8	chr10	48301677	48444360
MAPK8_chr10_48301677_48444360	0/0	t0018	4526	2	1	1	0	0	0	copy fasta	MAPK8	chr10	48301677	48444360
MAPK8_chr10_48301677_48444360	0/0	t0019	4526	2	2	0	0	0	0	copy fasta	MAPK8	chr10	48301677	48444360
MAPK8_chr10_48301677_48444360	0/1	t0020	4526	2	0	0	0	1	0	copy fasta	MAPK8	chr10	48301677	48444360
MAPK8_chr10_48301677_48444360	0/0	t0021	4526	1	1	0	0	0	0	copy fasta	MAPK8	chr10	48301677	48444360
MAPK8_chr10_48301677_48444360	0/0	t0022	4526	1	0	0	0	0	1	copy fasta	MAPK8	chr10	48301677	48444360
MAPK8_chr10_48301677_48444360	0/0	t0023	4526	1	1	0	0	0	0	copy fasta	MAPK8	chr10	48301677	48444360
MAPK8_chr10_48301677_48444360	0/0	t0024	4526	1	0	0	0	0	1	copy fasta	MAPK8	chr10	48301677	48444360
MAPK8_chr10_48301677_48444360	0/0	t0025	4526	1	1	0	0	0	0	copy fasta	MAPK8	chr10	48301677	48444360
MAPK8_chr10_48301677_48444360	0/0	t0026	4526	1	0	0	1	0	0	copy fasta	MAPK8	chr10	48301677	48444360
MAPK8_chr10_48301677_48444360	0/0	t0027	4526	1	0	0	1	0	0	copy fasta	MAPK8	chr10	48301677	48444360
MAPK8_chr10_48301677_48444360	0/0	t0028	4526	1	1	0	0	0	0	copy fasta	MAPK8	chr10	48301677	48444360
MAPK8_chr10_48301677_48444360	0/0	t0029	4526	1	1	0	0	0	0	copy fasta	MAPK8	chr10	48301677	48444360
MAPK8_chr10_48301677_48444360	0/0	t0030	4524	1	1	0	0	0	0	copy fasta	MAPK8	chr10	48301677	48444360
MAPK8_chr10_48301677_48444360	0/0	t0031	4526	1	0	0	1	0	0	copy fasta	MAPK8	chr10	48301677	48444360