JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAPK8_chr10_48301677_48444360	0/0	t0032	4526	1	0	1	0	0	0	copy fasta	MAPK8	chr10	48301677	48444360
MAPK9_chr5_180228143_180297083	0/0	t0001	3522	109	18	13	66	5	7	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	1/0	t0002	3525	38	6	3	19	2	7	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0003	3525	30	5	11	8	3	3	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0004	3519	24	1	10	9	0	4	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0005	3519	21	1	0	20	0	0	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0006	3528	18	9	2	7	0	0	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0007	3522	18	0	1	13	1	3	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0008	3525	17	2	9	0	3	3	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0009	3522	13	2	9	0	0	2	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0010	3525	6	0	1	0	1	4	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0011	3522	5	2	1	0	0	2	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0012	3522	5	5	0	0	0	0	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/1	t0013	3522	5	1	0	1	1	1	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0014	3519	5	5	0	0	0	0	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0015	3528	4	4	0	0	0	0	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0016	3525	4	4	0	0	0	0	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0017	3522	4	1	1	0	0	2	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0018	3522	4	0	3	1	0	0	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0019	3522	4	4	0	0	0	0	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0020	3522	4	1	0	1	0	2	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0021	3522	3	2	0	0	0	1	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0022	3522	3	3	0	0	0	0	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0023	3525	2	2	0	0	0	0	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0024	3522	2	2	0	0	0	0	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0025	3522	2	2	0	0	0	0	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0026	3519	2	2	0	0	0	0	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0027	3519	2	1	0	0	0	1	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0028	3528	1	1	0	0	0	0	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0029	3525	1	0	0	1	0	0	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0030	3525	1	0	0	1	0	0	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0031	3525	1	1	0	0	0	0	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0032	3525	1	1	0	0	0	0	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0033	3525	1	0	1	0	0	0	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0034	3522	1	0	1	0	0	0	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0035	3522	1	0	0	1	0	0	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0036	3522	1	0	0	0	0	1	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0037	3522	1	0	0	1	0	0	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0038	3522	1	0	0	1	0	0	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0039	3522	1	0	1	0	0	0	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0040	3522	1	0	1	0	0	0	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0041	3519	1	0	0	1	0	0	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0042	3522	1	0	0	0	0	1	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0043	3522	1	0	0	1	0	0	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0044	3525	1	1	0	0	0	0	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	t0045	3522	1	1	0	0	0	0	copy fasta	MAPK9	chr5	180228143	180297083
MAPKAP1_chr9_125432394_125712208	0/1	t0001	1801	183	50	29	78	6	19	copy fasta	MAPKAP1	chr9	125432394	125712208
MAPKAP1_chr9_125432394_125712208	0/0	t0002	1801	53	3	17	18	3	12	copy fasta	MAPKAP1	chr9	125432394	125712208
MAPKAP1_chr9_125432394_125712208	0/0	t0003	1801	16	7	4	0	1	4	copy fasta	MAPKAP1	chr9	125432394	125712208
MAPKAP1_chr9_125432394_125712208	0/0	t0004	1801	10	8	2	0	0	0	copy fasta	MAPKAP1	chr9	125432394	125712208