JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAPKAPK5_chr12_111837228_111907222	0/0	t0007	9667	9	0	0	2	0	7	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0008	9660	8	0	0	8	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0009	9666	8	1	1	4	0	2	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0010	9676	8	7	1	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0011	9659	7	7	0	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0012	9664	6	5	1	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0013	9676	6	3	0	2	0	1	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0014	9678	6	1	5	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0015	9669	5	5	0	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0016	9668	4	0	2	0	2	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0017	9671	4	4	0	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0018	9673	4	3	1	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0019	9666	3	0	0	3	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0020	9662	3	0	2	0	1	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0021	9662	3	1	2	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0022	9676	3	3	0	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0023	9677	3	2	1	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0024	9662	2	2	0	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0025	9662	2	0	0	2	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0026	9667	2	0	0	2	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0027	9671	2	2	0	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0028	9667	2	0	0	1	0	1	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0029	9668	2	0	0	2	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0030	9666	2	0	0	0	0	2	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0031	9668	2	0	0	0	0	2	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0032	9668	2	0	0	2	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0033	9678	2	0	0	2	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0034	9673	2	2	0	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0035	9678	2	2	0	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0036	9678	2	0	0	2	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0037	9678	2	0	0	2	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0038	9675	2	0	0	1	0	1	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0039	9677	2	0	0	2	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0040	9678	2	0	0	2	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0041	9680	2	0	0	1	0	1	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0042	9668	2	0	0	2	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0043	9662	1	1	0	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0044	9664	1	0	0	0	0	1	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0045	9664	1	1	0	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0046	9668	1	0	1	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0047	9670	1	0	0	1	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0048	9668	1	0	0	1	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0049	9672	1	0	0	1	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0050	9669	1	0	0	1	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0051	9671	1	0	0	1	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0052	9663	1	0	0	1	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0053	9667	1	0	0	1	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0054	9669	1	0	0	1	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0055	9660	1	1	0	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0056	9659	1	1	0	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222