JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAPKAPK5_chr12_111837228_111907222	0/0	t0057	9661	1	1	0	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0058	9661	1	1	0	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0059	9663	1	1	0	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0060	9666	1	0	0	1	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0061	9665	1	0	1	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0062	9662	1	1	0	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0063	9665	1	0	0	1	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0064	9664	1	0	0	1	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0065	9666	1	1	0	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0066	9667	1	1	0	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0067	9667	1	1	0	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0068	9668	1	0	1	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0069	9672	1	0	0	1	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0070	9667	1	0	0	1	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0071	9668	1	0	1	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	1/0	t0072	9668	1	0	0	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0073	9670	1	0	0	1	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0074	9668	1	0	0	0	0	1	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0075	9668	1	0	0	0	0	1	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0076	9669	1	0	0	0	0	1	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0077	9670	1	0	0	0	0	1	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0078	9672	1	1	0	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0079	9673	1	1	0	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0080	9674	1	1	0	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0081	9676	1	1	0	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0082	9677	1	1	0	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0083	9679	1	0	1	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0084	9681	1	1	0	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0085	9682	1	1	0	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0086	9682	1	1	0	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0087	9679	1	1	0	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0088	9681	1	1	0	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0089	9683	1	1	0	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0090	9668	1	1	0	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0091	9669	1	0	1	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0092	9677	1	0	0	1	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0093	9677	1	0	0	1	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0094	9674	1	0	0	1	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0095	9676	1	1	0	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0096	9678	1	0	0	1	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0097	9680	1	0	0	1	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0098	9680	1	0	1	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0099	9668	1	0	0	1	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0100	9679	1	0	0	1	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0101	9679	1	0	0	1	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	t0102	9678	1	0	0	1	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKBP1_chr15_41769484_41832855	1/0	t0001	2656	74	3	16	46	1	7	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/1	t0002	2659	73	2	28	30	3	9	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	t0003	2627	46	10	12	3	6	15	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	t0004	2658	31	14	12	1	2	2	copy fasta	MAPKBP1	chr15	41769484	41832855