Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
ABL2_chr1_179094330_179234677	0/0	t0064	8674	1	0	0	1	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0065	8662	1	0	1	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0066	8673	1	0	0	1	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0067	8669	1	0	0	1	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0068	8678	1	0	0	0	1	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0069	8675	1	0	0	1	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0070	8674	1	0	0	1	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0071	8675	1	0	1	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0072	8676	1	0	0	1	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0073	8676	1	1	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0074	8674	1	0	0	1	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0075	8667	1	0	1	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0076	8673	1	0	0	1	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0077	8669	1	1	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0078	8668	1	1	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0079	8672	1	0	1	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0080	8671	1	1	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0081	8655	1	1	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0082	8682	1	0	0	1	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0083	8664	1	0	0	0	1	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0084	8663	1	0	0	0	1	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0085	8664	1	0	0	1	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0086	8662	1	0	0	1	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0087	8664	1	0	1	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0088	8664	1	0	0	0	1	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	1/0	t0089	8669	1	0	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0090	8664	1	0	0	0	1	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0091	8664	1	1	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0092	8656	1	1	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0093	8681	1	0	1	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0094	8680	1	0	0	1	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0095	8678	1	1	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0096	8666	1	1	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0097	8665	1	1	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0098	8678	1	1	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0099	8668	1	1	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0100	8678	1	0	0	1	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0101	8660	1	0	0	1	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0102	8665	1	1	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0103	8663	1	1	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0104	8665	1	0	1	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0105	8660	1	0	0	1	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0106	8660	1	0	0	1	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0107	8660	1	0	0	1	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0108	8660	1	0	0	1	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0109	8660	1	0	0	1	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0110	8660	1	0	0	0	1	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0111	8656	1	1	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0112	8676	1	1	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0113	8675	1	1	0	0	0	copy fasta	ABL2	chr1	179094330	179234677