Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARAP3_chr5_141648402_141687230	0/0	t0005	624	1	1	0	0	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARCN1_chr11_118567409_118608033	0/1	t0001	2456	227	67	56	69	11	23	copy fasta	ARCN1	chr11	118567409	118608033
ARCN1_chr11_118567409_118608033	0/0	t0002	2456	85	1	2	69	1	12	copy fasta	ARCN1	chr11	118567409	118608033
ARCN1_chr11_118567409_118608033	1/0	t0003	2459	7	1	2	0	2	1	copy fasta	ARCN1	chr11	118567409	118608033
ARCN1_chr11_118567409_118608033	0/0	t0004	2456	6	0	0	6	0	0	copy fasta	ARCN1	chr11	118567409	118608033
ARCN1_chr11_118567409_118608033	0/0	t0005	2457	5	5	0	0	0	0	copy fasta	ARCN1	chr11	118567409	118608033
ARCN1_chr11_118567409_118608033	0/0	t0006	2456	5	5	0	0	0	0	copy fasta	ARCN1	chr11	118567409	118608033
ARCN1_chr11_118567409_118608033	0/0	t0007	2450	4	3	1	0	0	0	copy fasta	ARCN1	chr11	118567409	118608033
ARCN1_chr11_118567409_118608033	0/0	t0008	2457	3	0	0	3	0	0	copy fasta	ARCN1	chr11	118567409	118608033
ARCN1_chr11_118567409_118608033	0/0	t0009	2456	3	3	0	0	0	0	copy fasta	ARCN1	chr11	118567409	118608033
ARCN1_chr11_118567409_118608033	0/0	t0010	2456	3	0	0	3	0	0	copy fasta	ARCN1	chr11	118567409	118608033
ARCN1_chr11_118567409_118608033	0/0	t0011	2456	2	2	0	0	0	0	copy fasta	ARCN1	chr11	118567409	118608033
ARCN1_chr11_118567409_118608033	0/0	t0012	2456	2	2	0	0	0	0	copy fasta	ARCN1	chr11	118567409	118608033
ARCN1_chr11_118567409_118608033	0/0	t0013	2456	2	0	2	0	0	0	copy fasta	ARCN1	chr11	118567409	118608033
ARCN1_chr11_118567409_118608033	0/0	t0014	2455	2	0	0	2	0	0	copy fasta	ARCN1	chr11	118567409	118608033
ARCN1_chr11_118567409_118608033	0/0	t0015	2456	1	0	0	0	0	1	copy fasta	ARCN1	chr11	118567409	118608033
ARCN1_chr11_118567409_118608033	0/0	t0016	2456	1	0	0	1	0	0	copy fasta	ARCN1	chr11	118567409	118608033
ARCN1_chr11_118567409_118608033	0/0	t0017	2456	1	0	0	1	0	0	copy fasta	ARCN1	chr11	118567409	118608033
ARCN1_chr11_118567409_118608033	0/0	t0018	2459	1	0	0	1	0	0	copy fasta	ARCN1	chr11	118567409	118608033
ARCN1_chr11_118567409_118608033	0/0	t0019	2456	1	0	0	0	0	1	copy fasta	ARCN1	chr11	118567409	118608033
ARCN1_chr11_118567409_118608033	0/0	t0020	2456	1	0	1	0	0	0	copy fasta	ARCN1	chr11	118567409	118608033
ARCN1_chr11_118567409_118608033	0/0	t0021	2455	1	0	0	1	0	0	copy fasta	ARCN1	chr11	118567409	118608033
ARCN1_chr11_118567409_118608033	0/0	t0022	2456	1	0	0	1	0	0	copy fasta	ARCN1	chr11	118567409	118608033
ARCN1_chr11_118567409_118608033	0/0	t0023	2456	1	0	1	0	0	0	copy fasta	ARCN1	chr11	118567409	118608033
ARCN1_chr11_118567409_118608033	0/0	t0024	2456	1	0	0	1	0	0	copy fasta	ARCN1	chr11	118567409	118608033
ARCN1_chr11_118567409_118608033	0/0	t0025	2456	1	0	1	0	0	0	copy fasta	ARCN1	chr11	118567409	118608033
ARCN1_chr11_118567409_118608033	0/0	t0026	2459	1	1	0	0	0	0	copy fasta	ARCN1	chr11	118567409	118608033
ARC_chr8_142606049_142619479	0/0	t0001	1760	97	20	17	42	7	11	copy fasta	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	1/1	t0002	1760	85	11	20	35	5	12	copy fasta	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	t0003	1760	71	9	6	44	0	12	copy fasta	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	t0004	1760	55	11	32	1	3	8	copy fasta	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	t0005	1760	47	1	0	44	0	2	copy fasta	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	t0006	1760	19	17	1	0	0	1	copy fasta	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	t0007	1760	7	7	0	0	0	0	copy fasta	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	t0008	1760	5	5	0	0	0	0	copy fasta	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	t0009	1760	5	0	0	5	0	0	copy fasta	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	t0010	1760	3	2	1	0	0	0	copy fasta	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	t0011	1760	3	0	0	3	0	0	copy fasta	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	t0012	1760	2	2	0	0	0	0	copy fasta	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	t0013	1760	2	2	0	0	0	0	copy fasta	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	t0014	1760	2	2	0	0	0	0	copy fasta	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	t0015	1760	2	2	0	0	0	0	copy fasta	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	t0016	1760	1	0	0	1	0	0	copy fasta	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	t0017	1760	1	0	0	1	0	0	copy fasta	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	t0018	1760	1	0	0	1	0	0	copy fasta	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	t0019	1760	1	0	0	0	0	1	copy fasta	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	t0020	1760	1	0	0	0	0	1	copy fasta	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	t0021	1760	1	1	0	0	0	0	copy fasta	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	t0022	1760	1	0	0	1	0	0	copy fasta	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	t0023	1760	1	1	0	0	0	0	copy fasta	ARC	chr8	142606049	142619479