JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAPKBP1_chr15_41769484_41832855	0/0	t0005	2658	27	4	0	21	0	2	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	t0006	2658	21	21	0	0	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	t0007	2659	7	6	1	0	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	t0008	2658	6	5	1	0	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	t0009	2659	6	0	0	6	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	t0010	2658	4	4	0	0	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	t0011	2658	3	3	0	0	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	t0012	2657	3	2	1	0	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	t0013	2656	3	3	0	0	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	t0014	2627	2	0	0	2	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	t0015	2659	2	2	0	0	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	t0016	2659	2	0	0	0	0	2	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	t0017	2656	2	0	0	2	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	t0018	2656	1	0	0	1	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	t0019	2659	1	0	0	1	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	t0020	2627	1	0	0	0	0	1	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	t0021	2658	1	1	0	0	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	t0022	2658	1	0	0	1	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	t0023	2658	1	1	0	0	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	t0024	2645	1	1	0	0	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	t0025	2658	1	1	0	0	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	t0026	2658	1	1	0	0	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	t0027	2658	1	0	1	0	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	t0028	2656	1	0	0	1	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	t0029	2656	1	0	0	1	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	t0030	2656	1	0	0	1	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	t0031	2656	1	0	0	1	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	t0032	2658	1	1	0	0	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	t0033	2659	1	1	0	0	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPRE1_chr20_32814954_32855405	0/1	t0001	1756	300	69	39	159	6	26	copy fasta	MAPRE1	chr20	32814954	32855405
MAPRE1_chr20_32814954_32855405	1/0	t0002	1756	46	2	24	1	5	13	copy fasta	MAPRE1	chr20	32814954	32855405
MAPRE1_chr20_32814954_32855405	0/0	t0003	1756	23	18	2	0	0	3	copy fasta	MAPRE1	chr20	32814954	32855405
MAPRE1_chr20_32814954_32855405	0/0	t0004	1756	6	1	4	0	1	0	copy fasta	MAPRE1	chr20	32814954	32855405
MAPRE1_chr20_32814954_32855405	0/0	t0005	1756	4	4	0	0	0	0	copy fasta	MAPRE1	chr20	32814954	32855405
MAPRE1_chr20_32814954_32855405	0/0	t0006	1756	2	2	0	0	0	0	copy fasta	MAPRE1	chr20	32814954	32855405
MAPRE1_chr20_32814954_32855405	0/0	t0007	1756	1	0	0	0	0	1	copy fasta	MAPRE1	chr20	32814954	32855405
MAPRE1_chr20_32814954_32855405	0/0	t0008	1756	1	0	0	0	0	1	copy fasta	MAPRE1	chr20	32814954	32855405
MAPRE1_chr20_32814954_32855405	0/0	t0009	1756	1	0	1	0	0	0	copy fasta	MAPRE1	chr20	32814954	32855405
MAPRE1_chr20_32814954_32855405	0/0	t0010	1756	1	0	1	0	0	0	copy fasta	MAPRE1	chr20	32814954	32855405
MAPRE1_chr20_32814954_32855405	0/0	t0011	1756	1	0	1	0	0	0	copy fasta	MAPRE1	chr20	32814954	32855405
MAPRE2_chr18_35036413_35148470	0/0	t0001	3230	91	6	16	55	2	12	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/1	t0002	3228	48	25	3	14	0	5	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	1/0	t0003	3229	45	2	14	22	2	4	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	t0004	3227	42	0	5	34	0	3	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	t0005	3225	29	1	8	15	0	5	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	t0006	3225	19	0	1	18	0	0	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	t0007	3229	14	10	0	3	0	1	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	t0008	3221	9	1	4	0	2	2	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	t0009	3221	9	7	2	0	0	0	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	t0010	3229	6	0	0	5	1	0	copy fasta	MAPRE2	chr18	35036413	35148470