JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAPRE2_chr18_35036413_35148470	0/0	t0011	3227	5	4	1	0	0	0	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	t0012	3231	5	5	0	0	0	0	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	t0013	3232	4	4	0	0	0	0	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	t0014	3230	3	0	3	0	0	0	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	t0015	3229	3	3	0	0	0	0	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	t0016	3228	3	0	2	1	0	0	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	t0017	3226	3	3	0	0	0	0	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	t0018	3230	2	2	0	0	0	0	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	t0019	3230	2	2	0	0	0	0	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	t0020	3230	2	0	2	0	0	0	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	t0021	3230	2	2	0	0	0	0	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	t0022	3228	2	0	1	1	0	0	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	t0023	3224	2	0	0	2	0	0	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	t0024	3225	2	2	0	0	0	0	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	t0025	3231	1	1	0	0	0	0	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	t0026	3229	1	0	1	0	0	0	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	t0027	3228	1	0	0	1	0	0	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	t0028	3228	1	1	0	0	0	0	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	t0029	3229	1	0	0	0	1	0	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	t0030	3228	1	0	0	1	0	0	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	t0031	3227	1	0	0	1	0	0	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	t0032	3229	1	0	0	1	0	0	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	t0033	3233	1	1	0	0	0	0	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	t0034	3231	1	1	0	0	0	0	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	t0035	3231	1	1	0	0	0	0	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	t0036	3222	1	0	0	0	0	1	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	t0037	3220	1	0	1	0	0	0	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	t0038	3221	1	0	0	0	0	1	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	t0039	3221	1	1	0	0	0	0	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	t0040	3224	1	0	0	1	0	0	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	t0041	3224	1	0	0	1	0	0	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	t0042	3224	1	1	0	0	0	0	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE3_chr2_26965637_27032219	0/1	t0001	1045	148	56	27	46	7	11	copy fasta	MAPRE3	chr2	26965637	27032219
MAPRE3_chr2_26965637_27032219	1/0	t0002	1045	108	29	23	39	7	9	copy fasta	MAPRE3	chr2	26965637	27032219
MAPRE3_chr2_26965637_27032219	0/0	t0003	1045	1	0	0	1	0	0	copy fasta	MAPRE3	chr2	26965637	27032219
MAPRE3_chr2_26965637_27032219	0/0	t0004	1045	1	1	0	0	0	0	copy fasta	MAPRE3	chr2	26965637	27032219
MAPT_chr17_45889554_46033334	0/0	t0001	4316	64	2	18	37	3	4	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	t0002	4314	63	26	18	7	3	9	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	t0003	4312	52	10	14	21	3	4	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	t0004	4311	17	2	6	1	2	6	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	t0005	4312	11	11	0	0	0	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	t0006	4313	6	0	1	4	1	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	t0007	4312	6	6	0	0	0	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	t0008	4314	4	3	0	1	0	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	t0009	4315	4	4	0	0	0	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	t0010	4315	3	3	0	0	0	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	t0011	4310	2	0	1	0	1	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	t0012	4314	2	0	1	0	0	1	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	t0013	4315	2	2	0	0	0	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	t0014	4313	2	2	0	0	0	0	copy fasta	MAPT	chr17	45889554	46033334