JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAPT_chr17_45889554_46033334	0/0	t0015	4309	1	0	1	0	0	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	t0016	4311	1	0	0	0	1	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	t0017	4312	1	0	0	1	0	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	t0018	4312	1	0	0	1	0	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	t0019	4314	1	0	0	0	0	1	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/1	t0020	4314	1	0	0	0	0	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	t0021	4314	1	0	1	0	0	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	t0022	4314	1	1	0	0	0	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	t0023	4314	1	0	0	0	0	1	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	t0024	4314	1	0	0	1	0	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	t0025	4313	1	1	0	0	0	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	t0026	4312	1	1	0	0	0	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	t0027	4314	1	1	0	0	0	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	t0028	4316	1	0	1	0	0	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	t0029	4313	1	1	0	0	0	0	copy fasta	MAPT	chr17	45889554	46033334
MARCHF10_chr17_62696314_62813314	0/1	t0001	645	196	45	41	77	6	26	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	1/0	t0002	645	43	19	9	8	2	4	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	t0003	645	11	1	0	6	0	4	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	t0004	645	10	0	0	10	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	t0005	645	6	5	1	0	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	t0006	645	5	3	2	0	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	t0007	645	3	2	0	0	0	1	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	t0008	645	2	2	0	0	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	t0009	681	1	0	0	0	0	1	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	t0010	645	1	1	0	0	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	t0011	645	1	0	0	1	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	t0012	645	1	0	1	0	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF11_chr5_16062139_16184791	1/1	t0001	549	267	62	44	122	12	25	copy fasta	MARCHF11	chr5	16062139	16184791
MARCHF11_chr5_16062139_16184791	0/0	t0002	549	25	22	2	0	0	1	copy fasta	MARCHF11	chr5	16062139	16184791
MARCHF11_chr5_16062139_16184791	0/0	t0003	549	4	0	0	4	0	0	copy fasta	MARCHF11	chr5	16062139	16184791
MARCHF11_chr5_16062139_16184791	0/0	t0004	549	1	0	1	0	0	0	copy fasta	MARCHF11	chr5	16062139	16184791
MARCHF11_chr5_16062139_16184791	0/0	t0005	549	1	0	1	0	0	0	copy fasta	MARCHF11	chr5	16062139	16184791
MARCHF1_chr4_163519718_164389019	0/0	t0001	4503	26	10	2	12	0	2	copy fasta	MARCHF1	chr4	163519718	164389019
MARCHF1_chr4_163519718_164389019	0/0	t0002	4519	13	0	5	7	0	1	copy fasta	MARCHF1	chr4	163519718	164389019
MARCHF1_chr4_163519718_164389019	0/0	t0003	4513	9	3	2	2	0	2	copy fasta	MARCHF1	chr4	163519718	164389019
MARCHF1_chr4_163519718_164389019	0/0	t0004	4511	6	0	0	5	0	1	copy fasta	MARCHF1	chr4	163519718	164389019
MARCHF1_chr4_163519718_164389019	0/0	t0005	4510	6	5	1	0	0	0	copy fasta	MARCHF1	chr4	163519718	164389019
MARCHF1_chr4_163519718_164389019	0/0	t0006	4516	6	5	1	0	0	0	copy fasta	MARCHF1	chr4	163519718	164389019
MARCHF1_chr4_163519718_164389019	0/0	t0007	4506	4	4	0	0	0	0	copy fasta	MARCHF1	chr4	163519718	164389019
MARCHF1_chr4_163519718_164389019	0/0	t0008	4511	3	0	1	2	0	0	copy fasta	MARCHF1	chr4	163519718	164389019
MARCHF1_chr4_163519718_164389019	0/0	t0009	4505	3	0	2	0	0	1	copy fasta	MARCHF1	chr4	163519718	164389019
MARCHF1_chr4_163519718_164389019	0/0	t0010	4503	2	0	0	2	0	0	copy fasta	MARCHF1	chr4	163519718	164389019
MARCHF1_chr4_163519718_164389019	0/0	t0011	4503	2	2	0	0	0	0	copy fasta	MARCHF1	chr4	163519718	164389019
MARCHF1_chr4_163519718_164389019	0/0	t0012	4503	2	0	0	2	0	0	copy fasta	MARCHF1	chr4	163519718	164389019
MARCHF1_chr4_163519718_164389019	0/0	t0013	4506	2	2	0	0	0	0	copy fasta	MARCHF1	chr4	163519718	164389019
MARCHF1_chr4_163519718_164389019	0/0	t0014	4506	2	2	0	0	0	0	copy fasta	MARCHF1	chr4	163519718	164389019
MARCHF1_chr4_163519718_164389019	0/0	t0015	4520	2	2	0	0	0	0	copy fasta	MARCHF1	chr4	163519718	164389019
MARCHF1_chr4_163519718_164389019	0/0	t0016	4503	1	1	0	0	0	0	copy fasta	MARCHF1	chr4	163519718	164389019
MARCHF1_chr4_163519718_164389019	0/0	t0017	4509	1	1	0	0	0	0	copy fasta	MARCHF1	chr4	163519718	164389019
MARCHF1_chr4_163519718_164389019	0/0	t0018	4513	1	0	0	0	0	1	copy fasta	MARCHF1	chr4	163519718	164389019