JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MARCHF1_chr4_163519718_164389019	0/0	t0019	4526	1	1	0	0	0	0	copy fasta	MARCHF1	chr4	163519718	164389019
MARCHF1_chr4_163519718_164389019	0/0	t0020	4515	1	1	0	0	0	0	copy fasta	MARCHF1	chr4	163519718	164389019
MARCHF1_chr4_163519718_164389019	0/0	t0021	4504	1	1	0	0	0	0	copy fasta	MARCHF1	chr4	163519718	164389019
MARCHF1_chr4_163519718_164389019	0/0	t0022	4503	1	1	0	0	0	0	copy fasta	MARCHF1	chr4	163519718	164389019
MARCHF1_chr4_163519718_164389019	0/0	t0023	4503	1	1	0	0	0	0	copy fasta	MARCHF1	chr4	163519718	164389019
MARCHF1_chr4_163519718_164389019	0/0	t0024	4503	1	1	0	0	0	0	copy fasta	MARCHF1	chr4	163519718	164389019
MARCHF1_chr4_163519718_164389019	0/0	t0025	4514	1	1	0	0	0	0	copy fasta	MARCHF1	chr4	163519718	164389019
MARCHF1_chr4_163519718_164389019	0/0	t0026	4503	1	1	0	0	0	0	copy fasta	MARCHF1	chr4	163519718	164389019
MARCHF1_chr4_163519718_164389019	0/0	t0027	4513	1	1	0	0	0	0	copy fasta	MARCHF1	chr4	163519718	164389019
MARCHF1_chr4_163519718_164389019	0/0	t0028	4513	1	1	0	0	0	0	copy fasta	MARCHF1	chr4	163519718	164389019
MARCHF1_chr4_163519718_164389019	0/0	t0029	4518	1	1	0	0	0	0	copy fasta	MARCHF1	chr4	163519718	164389019
MARCHF2_chr19_8408305_8444017	0/0	t0001	639	80	5	10	48	2	15	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	0/0	t0002	640	73	1	15	49	3	5	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	0/0	t0003	640	50	12	18	6	8	6	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	0/0	t0004	639	29	4	7	18	0	0	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	0/0	t0005	640	26	3	7	9	0	7	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	0/0	t0006	639	17	14	2	1	0	0	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	0/0	t0007	640	17	1	3	8	1	4	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	0/0	t0008	641	17	4	5	5	0	3	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	0/1	t0009	639	15	7	4	0	1	2	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	1/0	t0010	640	14	12	0	0	0	1	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	0/0	t0011	640	11	11	0	0	0	0	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	0/0	t0012	640	5	1	0	4	0	0	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	0/0	t0013	641	5	5	0	0	0	0	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	0/0	t0014	641	4	0	0	3	1	0	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	0/0	t0015	626	4	3	0	0	0	1	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	0/0	t0016	640	3	0	0	3	0	0	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	0/0	t0017	641	3	0	1	2	0	0	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	0/0	t0018	627	3	3	0	0	0	0	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	0/0	t0019	641	2	2	0	0	0	0	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	0/0	t0020	640	2	0	0	2	0	0	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	0/0	t0021	641	1	0	0	0	0	1	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	0/0	t0022	639	1	1	0	0	0	0	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	0/0	t0023	640	1	1	0	0	0	0	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	0/0	t0024	641	1	0	1	0	0	0	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	0/0	t0025	640	1	0	0	0	0	1	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	0/0	t0026	639	1	0	0	1	0	0	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	0/0	t0027	639	1	0	0	1	0	0	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	0/0	t0028	639	1	0	1	0	0	0	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	0/0	t0029	641	1	1	0	0	0	0	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	0/0	t0030	641	1	1	0	0	0	0	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	0/0	t0031	640	1	0	0	1	0	0	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	0/0	t0032	640	1	0	0	1	0	0	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF3_chr5_126862714_127035558	0/0	t0001	3187	46	3	9	27	1	6	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0002	3188	33	0	5	18	0	10	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0003	3188	13	0	1	7	4	1	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0004	3188	13	2	2	6	0	3	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0005	3189	8	0	2	5	0	1	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0006	3188	8	6	0	2	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0007	3187	8	0	0	4	2	2	copy fasta	MARCHF3	chr5	126862714	127035558