JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
MARCHF3_chr5_126862714_127035558	0/0	t0008	3185	8	7	1	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0009	3189	7	0	3	4	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0010	3190	6	6	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0011	3191	5	2	0	3	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0012	3190	4	1	2	1	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0013	3188	4	0	1	3	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0014	3186	4	1	2	1	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0015	3188	3	0	3	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0016	3191	3	3	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0017	3192	3	3	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0018	3189	3	1	0	0	2	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0019	3189	3	1	0	2	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0020	3188	3	1	1	1	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0021	3187	3	0	1	2	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0022	3187	3	1	0	1	1	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0023	3198	3	0	0	3	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0024	3197	3	0	0	3	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0025	3196	3	0	0	3	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0026	3187	2	0	2	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0027	3190	2	2	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0028	3193	2	2	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0029	3192	2	2	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0030	3192	2	2	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0031	3191	2	1	1	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0032	3187	2	0	0	2	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0033	3186	2	0	0	2	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0034	3188	2	0	0	2	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0035	3187	2	0	0	2	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0036	3187	2	2	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0037	3186	2	0	0	2	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0038	3197	2	0	0	0	2	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0039	3196	2	0	0	2	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0040	3186	1	1	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0041	3187	1	1	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0042	3189	1	0	0	1	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0043	3189	1	0	0	1	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0044	3189	1	0	0	1	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/1	t0045	3188	1	0	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0046	3188	1	0	0	1	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0047	3191	1	1	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0048	3190	1	1	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0049	3198	1	1	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0050	3197	1	1	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0051	3196	1	1	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0052	3192	1	1	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0053	3192	1	1	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0054	3192	1	1	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0055	3189	1	1	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0056	3189	1	1	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0057	3186	1	1	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558