JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MARCHF3_chr5_126862714_127035558	0/0	t0058	3188	1	0	1	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0059	3189	1	1	0	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0060	3185	1	0	1	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0061	3191	1	0	0	1	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0062	3191	1	1	0	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0063	3191	1	0	0	0	0	1	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0064	3191	1	0	0	1	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0065	3190	1	1	0	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0066	3190	1	1	0	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0067	3190	1	1	0	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0068	3190	1	0	0	1	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0069	3189	1	0	0	1	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0070	3189	1	1	0	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0071	3189	1	0	0	1	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0072	3189	1	1	0	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0073	3186	1	0	0	1	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0074	3188	1	0	0	0	0	1	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0075	3188	1	0	0	0	0	1	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0076	3188	1	0	0	1	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0077	3188	1	1	0	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0078	3188	1	0	0	1	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0079	3188	1	0	0	1	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0080	3188	1	1	0	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0081	3187	1	1	0	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0082	3187	1	1	0	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0083	3187	1	1	0	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0084	3186	1	1	0	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0085	3186	1	0	1	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0086	3186	1	1	0	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0087	3186	1	1	0	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0088	3186	1	1	0	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0089	3185	1	0	1	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0090	3185	1	1	0	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	1/0	t0091	3185	1	0	0	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0092	3187	1	0	0	0	0	1	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0093	3187	1	0	1	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0094	3189	1	0	0	1	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0095	3187	1	0	1	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0096	3189	1	0	0	0	0	1	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0097	3202	1	1	0	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0098	3197	1	0	0	0	0	1	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0099	3196	1	0	0	0	0	1	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0100	3197	1	0	0	0	1	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0101	3199	1	0	0	1	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0102	3197	1	0	0	0	0	1	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0103	3196	1	0	0	1	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0104	3196	1	0	0	1	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0105	3196	1	0	0	1	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0106	3186	1	0	0	1	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	t0107	3186	1	0	0	1	0	0	copy fasta	MARCHF3	chr5	126862714	127035558