JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MARCHF4_chr2_216252865_216377483	0/0	t0001	3669	57	7	11	36	1	2	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0002	3671	36	2	1	32	0	1	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0003	3677	31	0	8	19	1	3	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0004	3675	28	12	5	6	1	4	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0005	3673	24	1	6	13	1	3	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0006	3677	23	16	1	5	0	1	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0007	3679	16	14	0	1	0	1	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0008	3671	11	11	0	0	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0009	3675	9	2	3	2	0	2	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0010	3673	8	0	3	2	1	2	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0011	3661	6	6	0	0	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0012	3669	6	0	0	6	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0013	3673	5	0	0	5	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	1/0	t0014	3671	5	0	2	1	1	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0015	3679	4	4	0	0	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/1	t0016	3681	4	0	2	1	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0017	3677	3	1	0	0	0	2	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0018	3675	3	0	3	0	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0019	3675	3	0	2	0	0	1	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0020	3679	3	0	0	3	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0021	3669	3	2	0	0	0	1	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0022	3673	3	0	1	0	0	2	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0023	3669	2	0	0	1	0	1	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0024	3667	2	2	0	0	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0025	3661	2	2	0	0	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0026	3669	1	0	1	0	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0027	3679	1	1	0	0	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0028	3671	1	1	0	0	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0029	3669	1	0	0	1	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0030	3669	1	0	1	0	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0031	3626	1	0	1	0	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0032	3637	1	0	0	1	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0033	3661	1	1	0	0	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0034	3669	1	0	0	1	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0035	3671	1	0	1	0	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0036	3681	1	0	1	0	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0037	3671	1	0	0	0	1	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0038	3673	1	1	0	0	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0039	3669	1	0	0	1	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0040	3655	1	1	0	0	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0041	3667	1	0	0	1	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0042	3671	1	0	0	0	0	1	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0043	3683	1	0	0	0	1	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0044	3671	1	0	0	1	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0045	3667	1	0	0	1	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0046	3681	1	1	0	0	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0047	3661	1	1	0	0	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0048	3677	1	0	1	0	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0049	3669	1	1	0	0	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0050	3661	1	1	0	0	0	0	copy fasta	MARCHF4	chr2	216252865	216377483