JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MARCHF4_chr2_216252865_216377483	0/0	t0051	3677	1	1	0	0	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0052	3669	1	1	0	0	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0053	3677	1	1	0	0	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0054	3671	1	1	0	0	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0055	3673	1	1	0	0	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0056	3671	1	1	0	0	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0057	3675	1	0	0	0	0	1	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	t0058	3669	1	1	0	0	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF5_chr10_92286167_92358964	0/0	t0001	3084	61	1	13	30	4	13	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	t0002	3091	51	19	14	13	4	1	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	t0003	3081	34	0	7	18	0	9	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	t0004	3087	19	16	2	0	0	1	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	t0005	3086	18	1	1	15	0	1	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	t0006	3097	13	0	4	1	3	5	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	t0007	3095	9	8	1	0	0	0	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	t0008	3099	9	1	7	0	0	1	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	t0009	3075	8	0	0	8	0	0	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	t0010	3093	7	5	1	1	0	0	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	t0011	3083	6	0	3	3	0	0	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	t0012	3089	6	4	0	2	0	0	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	1/0	t0013	3086	5	4	0	0	0	0	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	t0014	3101	5	0	1	3	0	1	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	t0015	3085	4	4	0	0	0	0	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	t0016	3097	4	1	1	0	0	2	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	t0017	3097	4	0	0	4	0	0	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	t0018	3087	3	3	0	0	0	0	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/1	t0019	3099	3	0	2	0	0	0	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	t0020	3093	3	0	0	3	0	0	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	t0021	3105	3	0	2	0	1	0	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	t0022	3089	2	2	0	0	0	0	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	t0023	3088	2	0	0	2	0	0	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	t0024	3090	2	0	0	2	0	0	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	t0025	3097	2	1	0	1	0	0	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	t0026	3097	2	2	0	0	0	0	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	t0027	3095	2	0	0	1	1	0	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	t0028	3103	2	0	1	0	0	1	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	t0029	3091	2	0	0	2	0	0	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	t0030	3095	2	0	0	2	0	0	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	t0031	3085	1	1	0	0	0	0	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	t0032	3080	1	0	0	1	0	0	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	t0033	3082	1	0	0	1	0	0	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	t0034	3089	1	1	0	0	0	0	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	t0035	3084	1	0	0	1	0	0	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	t0036	3093	1	0	0	0	0	1	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	t0037	3097	1	0	0	0	1	0	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	t0038	3099	1	0	1	0	0	0	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	t0039	3086	1	0	0	1	0	0	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	t0040	3099	1	0	0	0	0	1	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	t0041	3107	1	0	0	0	0	1	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	t0042	3109	1	0	1	0	0	0	copy fasta	MARCHF5	chr10	92286167	92358964