JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
MARCHF6_chr5_10348695_10445388	0/0	t0050	6902	1	0	0	1	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0051	6866	1	0	0	1	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	1/0	t0052	6909	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0053	6893	1	0	0	0	1	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0054	6887	1	1	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0055	6889	1	0	0	0	1	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0056	6879	1	0	0	0	1	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0057	6891	1	0	0	1	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0058	6890	1	0	0	1	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0059	6891	1	0	0	1	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0060	6893	1	0	0	1	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0061	6909	1	0	0	1	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0062	6901	1	0	0	0	1	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0063	6900	1	0	1	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0064	6904	1	0	0	1	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0065	6899	1	0	0	1	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0066	6901	1	0	0	1	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0067	6903	1	0	0	1	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0068	6905	1	0	0	1	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0069	6898	1	0	0	1	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0070	6899	1	0	0	1	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0071	6901	1	0	1	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0072	6894	1	0	0	1	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0073	6900	1	0	0	1	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0074	6891	1	0	0	0	1	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0075	6894	1	0	0	0	1	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0076	6895	1	0	0	0	1	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0077	6896	1	0	0	1	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0078	6891	1	0	0	1	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0079	6891	1	0	1	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0080	6893	1	0	0	1	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0081	6893	1	0	1	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0082	6889	1	0	0	1	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0083	6889	1	0	1	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0084	6891	1	0	1	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0085	6892	1	0	1	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0086	6887	1	0	1	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0087	6891	1	0	0	1	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0088	6893	1	0	0	1	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0089	6895	1	0	0	1	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0090	6886	1	0	0	1	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0091	6895	1	0	0	1	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0092	6888	1	0	1	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0093	6883	1	0	1	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0094	6883	1	0	1	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0095	6891	1	0	0	1	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0096	6877	1	0	0	1	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0097	6882	1	1	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0098	6886	1	0	1	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0099	6877	1	0	1	0	0	copy fasta	MARCHF6	chr5	10348695	10445388