Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARC_chr8_142606049_142619479	0/0	t0024	1760	1	0	0	0	1	0	copy fasta	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	t0025	1760	1	0	0	1	0	0	copy fasta	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	t0026	1760	1	1	0	0	0	0	copy fasta	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	t0027	1760	1	0	1	0	0	0	copy fasta	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	t0028	1760	1	1	0	0	0	0	copy fasta	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	t0029	1760	1	1	0	0	0	0	copy fasta	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	t0030	1760	1	0	0	1	0	0	copy fasta	ARC	chr8	142606049	142619479
AREG_chr4_74440136_74460005	1/1	t0001	476	398	71	63	205	16	41	copy fasta	AREG	chr4	74440136	74460005
AREG_chr4_74440136_74460005	0/0	t0002	476	17	14	3	0	0	0	copy fasta	AREG	chr4	74440136	74460005
AREG_chr4_74440136_74460005	0/0	t0003	476	7	0	0	7	0	0	copy fasta	AREG	chr4	74440136	74460005
AREG_chr4_74440136_74460005	0/0	t0004	476	3	0	0	0	0	3	copy fasta	AREG	chr4	74440136	74460005
AREG_chr4_74440136_74460005	0/0	t0005	476	2	0	0	2	0	0	copy fasta	AREG	chr4	74440136	74460005
AREG_chr4_74440136_74460005	0/0	t0006	476	1	1	0	0	0	0	copy fasta	AREG	chr4	74440136	74460005
AREL1_chr14_74656256_74718080	0/0	t0001	2944	93	24	15	36	3	15	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	1/0	t0002	2946	85	26	14	37	2	5	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/1	t0003	2946	83	1	22	46	6	7	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/0	t0004	2944	26	9	9	8	0	0	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/0	t0005	2946	21	0	3	18	0	0	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/0	t0006	2944	9	0	0	7	0	2	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/0	t0007	2944	8	7	1	0	0	0	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/0	t0008	2946	7	0	0	7	0	0	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/0	t0009	2944	6	5	1	0	0	0	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/0	t0010	2944	5	5	0	0	0	0	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/0	t0011	2944	4	4	0	0	0	0	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/0	t0012	2944	3	3	0	0	0	0	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/0	t0013	2946	3	3	0	0	0	0	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/0	t0014	2944	2	0	0	2	0	0	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/0	t0015	2946	2	2	0	0	0	0	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/0	t0016	2946	2	0	2	0	0	0	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/0	t0017	2946	2	0	0	1	1	0	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/0	t0018	2946	2	2	0	0	0	0	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/0	t0019	2944	1	1	0	0	0	0	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/0	t0020	2944	1	0	0	0	0	1	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/0	t0021	2944	1	0	0	1	0	0	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/0	t0022	2946	1	0	0	1	0	0	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/0	t0023	2946	1	0	0	1	0	0	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/0	t0024	2946	1	0	1	0	0	0	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/0	t0025	2946	1	0	0	1	0	0	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/0	t0026	2946	1	0	0	1	0	0	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/0	t0027	2946	1	1	0	0	0	0	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/0	t0028	2946	1	0	0	1	0	0	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/0	t0029	2944	1	1	0	0	0	0	copy fasta	AREL1	chr14	74656256	74718080
ARF1_chr1_228077708_228104212	1/1	t0001	1295	400	75	62	202	16	43	copy fasta	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	t0002	1295	5	5	0	0	0	0	copy fasta	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	t0003	1295	5	5	0	0	0	0	copy fasta	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	t0004	1295	5	0	5	0	0	0	copy fasta	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	t0005	1295	4	0	0	4	0	0	copy fasta	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	t0006	1295	3	0	0	3	0	0	copy fasta	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	t0007	1295	3	3	0	0	0	0	copy fasta	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	t0008	1295	1	0	0	1	0	0	copy fasta	ARF1	chr1	228077708	228104212