JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MARCHF6_chr5_10348695_10445388	0/0	t0100	6875	1	0	1	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0101	6879	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0102	6880	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0103	6862	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0104	6870	1	0	0	1	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0105	6874	1	0	0	1	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0106	6876	1	0	0	1	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0107	6878	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0108	6880	1	0	1	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0109	6881	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0110	6869	1	0	0	0	0	1	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0111	6876	1	0	0	0	1	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0112	6877	1	0	0	0	0	1	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0113	6875	1	0	0	0	1	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0114	6869	1	0	0	0	0	1	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0115	6872	1	0	1	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0116	6852	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0117	6852	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/1	t0118	6865	1	0	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0119	6864	1	0	0	1	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0120	6871	1	0	0	0	0	1	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0121	6861	1	0	0	0	0	1	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0122	6862	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0123	6860	1	0	0	1	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0124	6863	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0125	6878	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0126	6855	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0127	6863	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0128	6862	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0129	6863	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0130	6856	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0131	6892	1	0	0	1	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0132	6902	1	0	0	0	0	1	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0133	6865	1	0	0	1	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0134	6866	1	0	0	0	1	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0135	6864	1	0	0	1	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0136	6875	1	0	0	1	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0137	6879	1	0	0	1	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0138	6876	1	0	0	0	0	1	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0139	6869	1	0	0	1	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0140	6871	1	0	0	0	0	1	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0141	6863	1	0	0	1	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0142	6866	1	0	0	0	0	1	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0143	6869	1	0	0	1	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0144	6868	1	0	0	0	0	1	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0145	6865	1	0	0	1	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0146	6866	1	0	1	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0147	6861	1	0	0	1	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0148	6862	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0149	6865	1	0	1	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388