JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MARCHF6_chr5_10348695_10445388	0/0	t0150	6865	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0151	6868	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0152	6862	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0153	6853	1	0	0	1	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0154	6865	1	0	0	1	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0155	6853	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0156	6877	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0157	6885	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0158	6881	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0159	6864	1	0	0	1	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0160	6857	1	0	0	1	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0161	6890	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0162	6883	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0163	6882	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0164	6852	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0165	6874	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0166	6897	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0167	6895	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0168	6895	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0169	6909	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0170	6896	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0171	6895	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0172	6895	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0173	6909	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0174	6908	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0175	6899	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0176	6897	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0177	6899	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0178	6891	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0179	6892	1	0	1	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0180	6893	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0181	6887	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0182	6890	1	0	1	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0183	6888	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0184	6871	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	t0185	6865	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF7_chr2_159707506_159776027	0/0	t0001	3929	87	1	31	48	3	4	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	t0002	3930	70	6	11	39	4	10	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	t0003	3933	42	2	7	32	1	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	1/0	t0004	3929	36	2	1	26	2	4	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	t0005	3929	14	13	1	0	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	t0006	3930	14	14	0	0	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	t0007	3929	11	0	0	11	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	t0008	3932	10	9	1	0	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	t0009	3933	10	5	0	3	0	2	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/1	t0010	3930	10	0	5	3	0	1	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	t0011	3931	9	3	1	0	3	2	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	t0012	3930	6	6	0	0	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	t0013	3932	4	2	2	0	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	t0014	3931	4	4	0	0	0	0	copy fasta	MARCHF7	chr2	159707506	159776027