JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MARCHF7_chr2_159707506_159776027	0/0	t0015	3932	3	0	0	1	1	1	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	t0016	3930	3	0	0	3	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	t0017	3935	2	0	0	2	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	t0018	3938	2	2	0	0	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	t0019	3929	2	0	0	2	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	t0020	3930	2	2	0	0	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	t0021	3929	2	0	0	2	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	t0022	3932	2	2	0	0	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	t0023	3926	2	0	0	0	0	2	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	t0024	3929	1	0	0	1	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	t0025	3933	1	0	0	1	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	t0026	3933	1	0	0	1	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	t0027	3929	1	0	0	1	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	t0028	3940	1	1	0	0	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	t0029	3930	1	0	1	0	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	t0030	3929	1	0	0	1	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	t0031	3929	1	0	0	1	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	t0032	3929	1	0	0	1	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	t0033	3931	1	1	0	0	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	t0034	3931	1	0	0	1	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	t0035	3933	1	1	0	0	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	t0036	3935	1	1	0	0	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	t0037	3937	1	1	0	0	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	t0038	3930	1	0	0	1	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	t0039	3881	1	0	0	1	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	t0040	3926	1	0	1	0	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF8_chr10_45449585_45540371	1/0	t0001	3894	179	39	35	80	5	19	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	t0002	3894	48	9	25	2	2	10	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	t0003	3894	30	1	0	24	3	2	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	t0004	3894	14	0	3	11	0	0	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	t0005	3894	14	1	0	9	1	3	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	t0006	3894	10	8	2	0	0	0	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	t0007	3894	9	0	0	8	0	1	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	t0008	3894	6	0	0	6	0	0	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	t0009	3894	5	4	1	0	0	0	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	t0010	3895	5	2	1	0	2	0	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	t0011	3894	3	3	0	0	0	0	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	t0012	3894	3	3	0	0	0	0	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	t0013	3894	2	0	0	2	0	0	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	t0014	3894	2	0	1	0	0	1	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	t0015	3894	2	0	0	2	0	0	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	t0016	3894	2	2	0	0	0	0	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	t0017	3894	2	0	0	0	2	0	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	t0018	3894	2	1	1	0	0	0	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	t0019	3894	1	0	0	1	0	0	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	t0020	3894	1	1	0	0	0	0	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	t0021	3894	1	0	0	1	0	0	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	t0022	3894	1	0	0	0	1	0	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	t0023	3894	1	0	0	0	0	1	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/1	t0024	3894	1	0	0	0	0	0	copy fasta	MARCHF8	chr10	45449585	45540371