JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MARCHF8_chr10_45449585_45540371	0/0	t0025	3894	1	0	1	0	0	0	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	t0026	3894	1	0	0	0	0	1	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	t0027	3894	1	1	0	0	0	0	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	t0028	3894	1	1	0	0	0	0	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF9_chr12_57750103_57765411	1/1	t0001	1941	207	26	39	97	8	35	copy fasta	MARCHF9	chr12	57750103	57765411
MARCHF9_chr12_57750103_57765411	0/0	t0002	1941	99	37	25	29	3	5	copy fasta	MARCHF9	chr12	57750103	57765411
MARCHF9_chr12_57750103_57765411	0/0	t0003	1941	13	0	3	7	2	1	copy fasta	MARCHF9	chr12	57750103	57765411
MARCHF9_chr12_57750103_57765411	0/0	t0004	1937	11	11	0	0	0	0	copy fasta	MARCHF9	chr12	57750103	57765411
MARCHF9_chr12_57750103_57765411	0/0	t0005	1941	7	7	0	0	0	0	copy fasta	MARCHF9	chr12	57750103	57765411
MARCHF9_chr12_57750103_57765411	0/0	t0006	1941	5	4	1	0	0	0	copy fasta	MARCHF9	chr12	57750103	57765411
MARCHF9_chr12_57750103_57765411	0/0	t0007	1941	2	2	0	0	0	0	copy fasta	MARCHF9	chr12	57750103	57765411
MARCHF9_chr12_57750103_57765411	0/0	t0008	1941	2	2	0	0	0	0	copy fasta	MARCHF9	chr12	57750103	57765411
MARCHF9_chr12_57750103_57765411	0/0	t0009	1941	2	0	0	2	0	0	copy fasta	MARCHF9	chr12	57750103	57765411
MARCHF9_chr12_57750103_57765411	0/0	t0010	1941	1	0	0	1	0	0	copy fasta	MARCHF9	chr12	57750103	57765411
MARCHF9_chr12_57750103_57765411	0/0	t0011	1941	1	0	0	0	0	1	copy fasta	MARCHF9	chr12	57750103	57765411
MARCHF9_chr12_57750103_57765411	0/0	t0012	1941	1	0	1	0	0	0	copy fasta	MARCHF9	chr12	57750103	57765411
MARCHF9_chr12_57750103_57765411	0/0	t0013	1941	1	0	0	0	1	0	copy fasta	MARCHF9	chr12	57750103	57765411
MARCHF9_chr12_57750103_57765411	0/0	t0014	1941	1	0	0	1	0	0	copy fasta	MARCHF9	chr12	57750103	57765411
MARCHF9_chr12_57750103_57765411	0/0	t0015	1941	1	1	0	0	0	0	copy fasta	MARCHF9	chr12	57750103	57765411
MARCHF9_chr12_57750103_57765411	0/0	t0016	1941	1	1	0	0	0	0	copy fasta	MARCHF9	chr12	57750103	57765411
MARCHF9_chr12_57750103_57765411	0/0	t0017	1941	1	0	1	0	0	0	copy fasta	MARCHF9	chr12	57750103	57765411
MARCHF9_chr12_57750103_57765411	0/0	t0018	1941	1	0	0	1	0	0	copy fasta	MARCHF9	chr12	57750103	57765411
MARCHF9_chr12_57750103_57765411	0/0	t0019	1941	1	1	0	0	0	0	copy fasta	MARCHF9	chr12	57750103	57765411
MARCKSL1_chr1_32328839_32341233	1/1	t0001	959	200	67	44	62	5	20	copy fasta	MARCKSL1	chr1	32328839	32341233
MARCKSL1_chr1_32328839_32341233	0/0	t0002	959	6	6	0	0	0	0	copy fasta	MARCKSL1	chr1	32328839	32341233
MARCKSL1_chr1_32328839_32341233	0/0	t0003	959	1	0	0	0	1	0	copy fasta	MARCKSL1	chr1	32328839	32341233
MARCKSL1_chr1_32328839_32341233	0/0	t0004	959	1	1	0	0	0	0	copy fasta	MARCKSL1	chr1	32328839	32341233
MARCKS_chr6_113852345_113868475	0/0	t0001	3297	70	2	20	37	3	8	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/0	t0002	3298	68	8	5	46	2	7	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/0	t0003	3298	49	3	9	26	1	10	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/0	t0004	3297	29	9	0	19	0	1	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/1	t0005	3297	25	0	3	17	2	2	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/0	t0006	3297	15	1	4	4	4	2	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/0	t0007	3296	13	0	0	13	0	0	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/0	t0008	3298	11	10	1	0	0	0	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/0	t0009	3297	9	0	3	4	0	2	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/0	t0010	3297	8	1	1	3	0	3	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/0	t0011	3297	7	7	0	0	0	0	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/0	t0012	3299	7	4	3	0	0	0	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/0	t0013	3298	6	0	4	0	0	2	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/0	t0014	3299	6	6	0	0	0	0	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/0	t0015	3300	6	0	0	6	0	0	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/0	t0016	3296	5	0	3	1	0	1	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/0	t0017	3297	5	5	0	0	0	0	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/0	t0018	3298	4	0	0	4	0	0	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/0	t0019	3296	4	0	0	3	1	0	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/0	t0020	3296	4	0	1	3	0	0	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/0	t0021	3297	4	0	1	3	0	0	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/0	t0022	3298	4	2	2	0	0	0	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/0	t0023	3299	4	3	0	1	0	0	copy fasta	MARCKS	chr6	113852345	113868475