JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MARCKS_chr6_113852345_113868475	0/0	t0074	3300	1	1	0	0	0	0	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/0	t0075	3300	1	1	0	0	0	0	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/0	t0076	3297	1	1	0	0	0	0	copy fasta	MARCKS	chr6	113852345	113868475
MARCOL_chr5_148233525_148248580	0/1	t0001	400	297	40	50	168	7	31	copy fasta	MARCOL	chr5	148233525	148248580
MARCOL_chr5_148233525_148248580	1/0	t0002	400	94	33	6	46	1	7	copy fasta	MARCOL	chr5	148233525	148248580
MARCOL_chr5_148233525_148248580	0/0	t0003	400	15	15	0	0	0	0	copy fasta	MARCOL	chr5	148233525	148248580
MARCOL_chr5_148233525_148248580	0/0	t0004	400	6	6	0	0	0	0	copy fasta	MARCOL	chr5	148233525	148248580
MARCOL_chr5_148233525_148248580	0/0	t0005	400	2	0	2	0	0	0	copy fasta	MARCOL	chr5	148233525	148248580
MARCOL_chr5_148233525_148248580	0/0	t0006	400	2	2	0	0	0	0	copy fasta	MARCOL	chr5	148233525	148248580
MARCOL_chr5_148233525_148248580	0/0	t0007	400	1	0	0	1	0	0	copy fasta	MARCOL	chr5	148233525	148248580
MARCOL_chr5_148233525_148248580	0/0	t0008	400	1	0	0	1	0	0	copy fasta	MARCOL	chr5	148233525	148248580
MARCO_chr2_118937194_118999660	1/1	t0001	248	394	94	70	164	18	46	copy fasta	MARCO	chr2	118937194	118999660
MARF1_chr16_15589387_15648154	0/1	t0001	2502	263	73	55	99	12	23	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	t0002	2503	41	3	10	23	0	5	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	t0003	2502	30	0	7	17	2	4	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	t0004	2503	9	0	2	6	0	1	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	t0005	2502	8	0	0	8	0	0	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	t0006	2502	8	7	1	0	0	0	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	t0007	2498	4	4	0	0	0	0	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	t0008	2502	4	0	0	4	0	0	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	t0009	2502	3	0	0	3	0	0	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	t0010	2502	2	0	0	0	2	0	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	t0011	2503	2	0	0	0	0	2	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	t0012	2503	2	2	0	0	0	0	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	t0013	2503	2	0	0	2	0	0	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	t0014	2502	1	0	0	0	0	1	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	t0015	2502	1	0	0	1	0	0	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	t0016	2502	1	1	0	0	0	0	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	t0017	2502	1	0	0	1	0	0	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	t0018	2502	1	0	0	1	0	0	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	t0019	2502	1	0	0	1	0	0	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	t0020	2502	1	0	0	0	0	1	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	t0021	2502	1	0	1	0	0	0	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	t0022	2480	1	0	0	1	0	0	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	t0023	2503	1	1	0	0	0	0	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	t0024	2503	1	0	0	1	0	0	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	t0025	2503	1	0	0	0	0	1	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	t0026	2503	1	0	0	1	0	0	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	t0027	2503	1	1	0	0	0	0	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	t0028	2502	1	0	0	1	0	0	copy fasta	MARF1	chr16	15589387	15648154
MARK1_chr1_220523136_220669461	1/1	t0001	2983	264	57	44	121	9	31	copy fasta	MARK1	chr1	220523136	220669461
MARK1_chr1_220523136_220669461	0/0	t0002	2984	12	10	2	0	0	0	copy fasta	MARK1	chr1	220523136	220669461
MARK1_chr1_220523136_220669461	0/0	t0003	2983	6	6	0	0	0	0	copy fasta	MARK1	chr1	220523136	220669461
MARK1_chr1_220523136_220669461	0/0	t0004	2983	3	3	0	0	0	0	copy fasta	MARK1	chr1	220523136	220669461
MARK1_chr1_220523136_220669461	0/0	t0005	2983	3	3	0	0	0	0	copy fasta	MARK1	chr1	220523136	220669461
MARK1_chr1_220523136_220669461	0/0	t0006	2966	2	0	0	2	0	0	copy fasta	MARK1	chr1	220523136	220669461
MARK1_chr1_220523136_220669461	0/0	t0007	2983	1	1	0	0	0	0	copy fasta	MARK1	chr1	220523136	220669461
MARK1_chr1_220523136_220669461	0/0	t0008	2983	1	0	0	1	0	0	copy fasta	MARK1	chr1	220523136	220669461
MARK1_chr1_220523136_220669461	0/0	t0009	2983	1	1	0	0	0	0	copy fasta	MARK1	chr1	220523136	220669461
MARK1_chr1_220523136_220669461	0/0	t0010	2983	1	0	0	1	0	0	copy fasta	MARK1	chr1	220523136	220669461