JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MARK1_chr1_220523136_220669461	0/0	t0011	2983	1	1	0	0	0	0	copy fasta	MARK1	chr1	220523136	220669461
MARK1_chr1_220523136_220669461	0/0	t0012	2983	1	0	0	0	1	0	copy fasta	MARK1	chr1	220523136	220669461
MARK1_chr1_220523136_220669461	0/0	t0013	2983	1	0	0	0	0	1	copy fasta	MARK1	chr1	220523136	220669461
MARK1_chr1_220523136_220669461	0/0	t0014	2983	1	0	0	1	0	0	copy fasta	MARK1	chr1	220523136	220669461
MARK2_chr11_63834110_63916020	0/0	t0001	2182	101	47	16	17	6	15	copy fasta	MARK2	chr11	63834110	63916020
MARK2_chr11_63834110_63916020	0/0	t0002	2184	47	4	16	14	4	9	copy fasta	MARK2	chr11	63834110	63916020
MARK2_chr11_63834110_63916020	0/0	t0003	2184	16	2	5	6	2	1	copy fasta	MARK2	chr11	63834110	63916020
MARK2_chr11_63834110_63916020	0/0	t0004	2182	15	1	6	1	2	5	copy fasta	MARK2	chr11	63834110	63916020
MARK2_chr11_63834110_63916020	0/0	t0005	2181	7	6	1	0	0	0	copy fasta	MARK2	chr11	63834110	63916020
MARK2_chr11_63834110_63916020	0/0	t0006	2181	7	4	2	1	0	0	copy fasta	MARK2	chr11	63834110	63916020
MARK2_chr11_63834110_63916020	0/0	t0007	2183	5	5	0	0	0	0	copy fasta	MARK2	chr11	63834110	63916020
MARK2_chr11_63834110_63916020	0/0	t0008	2182	4	4	0	0	0	0	copy fasta	MARK2	chr11	63834110	63916020
MARK2_chr11_63834110_63916020	0/0	t0009	2182	3	3	0	0	0	0	copy fasta	MARK2	chr11	63834110	63916020
MARK2_chr11_63834110_63916020	0/0	t0010	2184	3	2	1	0	0	0	copy fasta	MARK2	chr11	63834110	63916020
MARK2_chr11_63834110_63916020	0/0	t0011	2183	3	2	0	1	0	0	copy fasta	MARK2	chr11	63834110	63916020
MARK2_chr11_63834110_63916020	0/0	t0012	2185	3	0	1	2	0	0	copy fasta	MARK2	chr11	63834110	63916020
MARK2_chr11_63834110_63916020	0/0	t0013	2182	2	2	0	0	0	0	copy fasta	MARK2	chr11	63834110	63916020
MARK2_chr11_63834110_63916020	0/0	t0014	2182	2	2	0	0	0	0	copy fasta	MARK2	chr11	63834110	63916020
MARK2_chr11_63834110_63916020	0/0	t0015	2184	1	0	1	0	0	0	copy fasta	MARK2	chr11	63834110	63916020
MARK2_chr11_63834110_63916020	0/0	t0016	2182	1	1	0	0	0	0	copy fasta	MARK2	chr11	63834110	63916020
MARK2_chr11_63834110_63916020	0/0	t0017	2181	1	0	1	0	0	0	copy fasta	MARK2	chr11	63834110	63916020
MARK2_chr11_63834110_63916020	0/0	t0018	2182	1	1	0	0	0	0	copy fasta	MARK2	chr11	63834110	63916020
MARK2_chr11_63834110_63916020	0/0	t0019	2182	1	0	0	1	0	0	copy fasta	MARK2	chr11	63834110	63916020
MARK2_chr11_63834110_63916020	0/0	t0020	2182	1	0	0	1	0	0	copy fasta	MARK2	chr11	63834110	63916020
MARK2_chr11_63834110_63916020	0/0	t0021	2185	1	1	0	0	0	0	copy fasta	MARK2	chr11	63834110	63916020
MARK2_chr11_63834110_63916020	0/0	t0022	2181	1	0	1	0	0	0	copy fasta	MARK2	chr11	63834110	63916020
MARK2_chr11_63834110_63916020	0/0	t0023	2183	1	1	0	0	0	0	copy fasta	MARK2	chr11	63834110	63916020
MARK2_chr11_63834110_63916020	0/0	t0024	2185	1	0	0	1	0	0	copy fasta	MARK2	chr11	63834110	63916020
MARK2_chr11_63834110_63916020	0/0	t0025	2184	1	0	0	0	0	1	copy fasta	MARK2	chr11	63834110	63916020
MARK2_chr11_63834110_63916020	0/0	t0026	2182	1	0	0	1	0	0	copy fasta	MARK2	chr11	63834110	63916020
MARK2_chr11_63834110_63916020	0/0	t0027	2182	1	0	0	0	0	1	copy fasta	MARK2	chr11	63834110	63916020
MARK2_chr11_63834110_63916020	0/0	t0028	2182	1	0	1	0	0	0	copy fasta	MARK2	chr11	63834110	63916020
MARK3_chr14_103380415_103508831	0/1	t0001	1220	218	55	42	96	5	19	copy fasta	MARK3	chr14	103380415	103508831
MARK3_chr14_103380415_103508831	0/0	t0002	1220	83	1	21	50	3	8	copy fasta	MARK3	chr14	103380415	103508831
MARK3_chr14_103380415_103508831	0/0	t0003	1220	20	2	4	0	4	10	copy fasta	MARK3	chr14	103380415	103508831
MARK3_chr14_103380415_103508831	0/0	t0004	1220	7	7	0	0	0	0	copy fasta	MARK3	chr14	103380415	103508831
MARK3_chr14_103380415_103508831	1/0	t0005	1220	5	3	1	0	0	0	copy fasta	MARK3	chr14	103380415	103508831
MARK3_chr14_103380415_103508831	0/0	t0006	1220	3	1	0	0	0	2	copy fasta	MARK3	chr14	103380415	103508831
MARK3_chr14_103380415_103508831	0/0	t0007	1220	2	2	0	0	0	0	copy fasta	MARK3	chr14	103380415	103508831
MARK3_chr14_103380415_103508831	0/0	t0008	1220	2	0	0	2	0	0	copy fasta	MARK3	chr14	103380415	103508831
MARK3_chr14_103380415_103508831	0/0	t0009	1220	2	0	0	2	0	0	copy fasta	MARK3	chr14	103380415	103508831
MARK3_chr14_103380415_103508831	0/0	t0010	1220	1	0	0	1	0	0	copy fasta	MARK3	chr14	103380415	103508831
MARK3_chr14_103380415_103508831	0/0	t0011	1220	1	0	0	0	0	1	copy fasta	MARK3	chr14	103380415	103508831
MARK3_chr14_103380415_103508831	0/0	t0012	1220	1	0	0	1	0	0	copy fasta	MARK3	chr14	103380415	103508831
MARK3_chr14_103380415_103508831	0/0	t0013	1220	1	1	0	0	0	0	copy fasta	MARK3	chr14	103380415	103508831
MARK3_chr14_103380415_103508831	0/0	t0014	1220	1	1	0	0	0	0	copy fasta	MARK3	chr14	103380415	103508831
MARK3_chr14_103380415_103508831	0/0	t0015	1220	1	1	0	0	0	0	copy fasta	MARK3	chr14	103380415	103508831
MARK4_chr19_45246271_45310284	0/0	t0001	2893	51	6	16	20	4	5	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	t0002	2893	37	22	2	11	0	2	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	t0003	2894	25	2	5	12	0	6	copy fasta	MARK4	chr19	45246271	45310284