JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MARK4_chr19_45246271_45310284	0/0	t0004	2894	22	12	1	4	0	5	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	t0005	2893	21	2	4	11	2	2	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	t0006	2893	19	17	2	0	0	0	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/1	t0007	2894	12	0	2	6	1	2	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	t0008	2892	11	0	5	0	1	5	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	t0009	2893	8	0	3	0	2	3	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	t0010	2894	7	2	3	0	0	2	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	t0011	2889	6	6	0	0	0	0	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	t0012	2893	4	4	0	0	0	0	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	t0013	2896	2	2	0	0	0	0	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	t0014	2893	2	0	0	1	0	1	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	t0015	2893	2	0	1	0	1	0	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	t0016	2893	2	0	0	0	1	1	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	t0017	2893	2	0	1	0	1	0	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	t0018	2893	2	2	0	0	0	0	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	t0019	2893	2	2	0	0	0	0	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	t0020	2894	2	2	0	0	0	0	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	t0021	2894	2	2	0	0	0	0	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	1/0	t0022	2893	2	0	0	0	0	1	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	t0023	2897	1	1	0	0	0	0	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	t0024	2893	1	0	0	0	1	0	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	t0025	2893	1	0	0	1	0	0	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	t0026	2893	1	1	0	0	0	0	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	t0027	2892	1	0	1	0	0	0	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	t0028	2893	1	0	0	1	0	0	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	t0029	2893	1	0	0	1	0	0	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	t0030	2893	1	0	1	0	0	0	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	t0031	2893	1	1	0	0	0	0	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	t0032	2893	1	1	0	0	0	0	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	t0033	2893	1	1	0	0	0	0	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	t0034	2893	1	1	0	0	0	0	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	t0035	2893	1	1	0	0	0	0	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	t0036	2894	1	0	1	0	0	0	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	t0037	2894	1	0	0	0	0	1	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	t0038	2894	1	0	1	0	0	0	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	t0039	2893	1	0	1	0	0	0	copy fasta	MARK4	chr19	45246271	45310284
MARS1_chr12_57483068_57521652	1/1	t0001	95	288	80	50	112	10	34	copy fasta	MARS1	chr12	57483068	57521652
MARS2_chr2_197700369_197713395	1/0	t0001	1246	163	38	36	56	10	22	copy fasta	MARS2	chr2	197700369	197713395
MARS2_chr2_197700369_197713395	0/0	t0002	1249	124	8	22	80	3	11	copy fasta	MARS2	chr2	197700369	197713395
MARS2_chr2_197700369_197713395	0/1	t0003	1249	72	14	12	38	3	4	copy fasta	MARS2	chr2	197700369	197713395
MARS2_chr2_197700369_197713395	0/0	t0004	1249	6	4	0	2	0	0	copy fasta	MARS2	chr2	197700369	197713395
MARS2_chr2_197700369_197713395	0/0	t0005	1249	5	5	0	0	0	0	copy fasta	MARS2	chr2	197700369	197713395
MARS2_chr2_197700369_197713395	0/0	t0006	1249	3	0	0	3	0	0	copy fasta	MARS2	chr2	197700369	197713395
MARS2_chr2_197700369_197713395	0/0	t0007	1246	2	0	0	0	0	2	copy fasta	MARS2	chr2	197700369	197713395
MARS2_chr2_197700369_197713395	0/0	t0008	1249	1	1	0	0	0	0	copy fasta	MARS2	chr2	197700369	197713395
MARS2_chr2_197700369_197713395	0/0	t0009	1246	1	0	0	0	0	1	copy fasta	MARS2	chr2	197700369	197713395
MARS2_chr2_197700369_197713395	0/0	t0010	1232	1	1	0	0	0	0	copy fasta	MARS2	chr2	197700369	197713395
MARS2_chr2_197700369_197713395	0/0	t0011	1249	1	1	0	0	0	0	copy fasta	MARS2	chr2	197700369	197713395
MARS2_chr2_197700369_197713395	0/0	t0012	1249	1	0	0	1	0	0	copy fasta	MARS2	chr2	197700369	197713395
MARS2_chr2_197700369_197713395	0/0	t0013	1249	1	0	0	1	0	0	copy fasta	MARS2	chr2	197700369	197713395