JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MARS2_chr2_197700369_197713395	0/0	t0014	1246	1	0	0	1	0	0	copy fasta	MARS2	chr2	197700369	197713395
MARVELD1_chr10_97708730_97723150	1/1	t0001	2692	254	54	44	107	15	32	copy fasta	MARVELD1	chr10	97708730	97723150
MARVELD1_chr10_97708730_97723150	0/0	t0002	2691	117	17	22	64	2	12	copy fasta	MARVELD1	chr10	97708730	97723150
MARVELD1_chr10_97708730_97723150	0/0	t0003	2692	17	14	0	3	0	0	copy fasta	MARVELD1	chr10	97708730	97723150
MARVELD1_chr10_97708730_97723150	0/0	t0004	2692	5	5	0	0	0	0	copy fasta	MARVELD1	chr10	97708730	97723150
MARVELD1_chr10_97708730_97723150	0/0	t0005	2692	5	0	0	5	0	0	copy fasta	MARVELD1	chr10	97708730	97723150
MARVELD1_chr10_97708730_97723150	0/0	t0006	2692	4	0	0	4	0	0	copy fasta	MARVELD1	chr10	97708730	97723150
MARVELD1_chr10_97708730_97723150	0/0	t0007	2692	3	2	1	0	0	0	copy fasta	MARVELD1	chr10	97708730	97723150
MARVELD1_chr10_97708730_97723150	0/0	t0008	2691	3	0	0	3	0	0	copy fasta	MARVELD1	chr10	97708730	97723150
MARVELD1_chr10_97708730_97723150	0/0	t0009	2692	2	2	0	0	0	0	copy fasta	MARVELD1	chr10	97708730	97723150
MARVELD1_chr10_97708730_97723150	0/0	t0010	2692	2	0	0	2	0	0	copy fasta	MARVELD1	chr10	97708730	97723150
MARVELD1_chr10_97708730_97723150	0/0	t0011	2692	2	0	0	2	0	0	copy fasta	MARVELD1	chr10	97708730	97723150
MARVELD1_chr10_97708730_97723150	0/0	t0012	2692	2	0	2	0	0	0	copy fasta	MARVELD1	chr10	97708730	97723150
MARVELD1_chr10_97708730_97723150	0/0	t0013	2692	2	0	1	0	1	0	copy fasta	MARVELD1	chr10	97708730	97723150
MARVELD1_chr10_97708730_97723150	0/0	t0014	2691	1	0	1	0	0	0	copy fasta	MARVELD1	chr10	97708730	97723150
MARVELD1_chr10_97708730_97723150	0/0	t0015	2692	1	0	1	0	0	0	copy fasta	MARVELD1	chr10	97708730	97723150
MARVELD1_chr10_97708730_97723150	0/0	t0016	2692	1	0	0	1	0	0	copy fasta	MARVELD1	chr10	97708730	97723150
MARVELD1_chr10_97708730_97723150	0/0	t0017	2692	1	1	0	0	0	0	copy fasta	MARVELD1	chr10	97708730	97723150
MARVELD1_chr10_97708730_97723150	0/0	t0018	2692	1	0	0	1	0	0	copy fasta	MARVELD1	chr10	97708730	97723150
MARVELD1_chr10_97708730_97723150	0/0	t0019	2692	1	0	0	0	0	1	copy fasta	MARVELD1	chr10	97708730	97723150
MARVELD1_chr10_97708730_97723150	0/0	t0020	2692	1	0	1	0	0	0	copy fasta	MARVELD1	chr10	97708730	97723150
MARVELD1_chr10_97708730_97723150	0/0	t0021	2692	1	0	0	0	0	1	copy fasta	MARVELD1	chr10	97708730	97723150
MARVELD1_chr10_97708730_97723150	0/0	t0022	2691	1	0	1	0	0	0	copy fasta	MARVELD1	chr10	97708730	97723150
MARVELD1_chr10_97708730_97723150	0/0	t0023	2692	1	1	0	0	0	0	copy fasta	MARVELD1	chr10	97708730	97723150
MARVELD2_chr5_69410116_69449330	0/0	t0001	2761	61	7	13	34	3	4	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0002	2747	52	38	4	5	1	4	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0003	2771	41	4	11	17	1	8	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0004	2772	37	4	12	17	0	4	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0005	2770	30	4	2	20	1	3	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0006	2762	15	0	2	10	1	2	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0007	2769	11	1	0	8	0	2	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0008	2773	8	2	2	4	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0009	2773	7	0	2	4	0	1	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0010	2748	7	4	1	0	0	2	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0011	2770	6	0	0	6	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0012	2747	5	0	0	5	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0013	2768	5	0	0	5	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0014	2769	5	0	0	5	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0015	2772	4	0	1	2	0	1	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0016	2771	4	0	0	4	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0017	2772	3	0	1	2	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0018	2761	3	3	0	0	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0019	2760	3	3	0	0	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/1	t0020	2774	3	0	0	1	1	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0021	2763	3	0	0	3	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0022	2767	2	2	0	0	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0023	2770	2	0	0	2	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0024	2762	2	1	1	0	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0025	2747	1	0	0	0	0	1	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0026	2774	1	1	0	0	0	0	copy fasta	MARVELD2	chr5	69410116	69449330